PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C03979.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YB

Protein Properties

Length: 144aa MW: 15828.7 Da PI: 7.4426

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C03979.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	144.4	2.7e-45	18	109	4	95
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +d++lPianv+rimk +lP +akisk aket+qec++efi+fvt+eas++c+re+rktingdd+++a+ +lG+++y+++++ yl++yre e+ Pahal.C03979.1 18 HDNLLPIANVGRIMKDALPPQAKISKRAKETIQECATEFIGFVTGEASERCRRERRKTINGDDICHAMRSLGLDHYADAMRRYLQRYRESEE 109 699**************************************************************************************885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.4E-42	15	109	IPR009072	Histone-fold
SuperFamily	SSF47113	3.55E-33	19	111	IPR009072	Histone-fold
Pfam	PF00808	1.5E-24	22	85	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.2E-14	49	67	No hit	No description
PRINTS	PR00615	1.2E-14	68	86	No hit	No description
PRINTS	PR00615	1.2E-14	87	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MSMASDSSSR EDNSRAGHDN LLPIANVGRI MKDALPPQAK ISKRAKETIQ ECATEFIGFV 60 TGEASERCRR ERRKTINGDD ICHAMRSLGL DHYADAMRRY LQRYRESEEL AAALNSGGGG 120 GGIQIDVRAE LSIFRGDEQQ GRN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-38	18	106	4	92	Transcription factor HapC (Eurofung)
4g92_B	2e-38	18	106	4	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN974244	2e-98	JN974244.1 Zea mays HAP3-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814482.1	1e-100	transcriptional activator hap3-like
Swissprot	O04027	3e-43	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A2T8IIP1	2e-98	A0A2T8IIP1_9POAL; Uncharacterized protein
STRING	Pavir.Ea03969.1.p	1e-88	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2917	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	1e-44	nuclear factor Y, subunit B4

Link Out ? help Back to Top
Phytozome	Pahal.C03979.1

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]