PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C04110.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 200aa MW: 22101 Da PI: 6.8678

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04110.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.9	4.3e-09	125	164	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + RR+riN ++ L++l+P+ kK++ +++L +Av+Y+k L Pahal.C04110.1 125 KMRRERINARLRILQDLIPNG-----KKVDISTMLDEAVQYVKFL 164 89***************98.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.14E-13	113	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.176	115	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.5E-12	116	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.1E-8	121	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.34E-9	124	169	No hit	No description
Pfam	PF00010	3.4E-6	125	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MEAECASYWR SVDAICEESE MIAHLQSLLW SSSDVDLAPS SNVSYSLPGG SPFCINNNEN 60 SALVSSSNPH EDVDTRALTH GEKVGSKRKA ETHKEKNHGV EGHAAPLAPR GCKKSKASSQ 120 SCYAKMRRER INARLRILQD LIPNGKKVDI STMLDEAVQY VKFLHMQIKL LSSDELWMYA 180 PLAYDSVNMG MRLNSSVQE*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809609.1	1e-148	transcription factor bHLH84-like
TrEMBL	A0A2S3HE59	1e-146	A0A2S3HE59_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EHD8	1e-146	A0A2T7EHD8_9POAL; Uncharacterized protein
STRING	Pavir.Ca02388.1.p	1e-115	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14508	21	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	3e-36	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.C04110.1