PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04120.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 489aa    MW: 51555.7 Da    PI: 7.7088
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04120.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.3e-32229285259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  Pahal.C04120.1 229 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 285
                     8**************************************99.***************8 PP
2WRKY1084.5e-34385443159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  Pahal.C04120.1 385 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFAGCNVRKHIERASSDPKAVITTYEGKHNHE 443
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-28225287IPR003657WRKY domain
SuperFamilySSF1182902.48E-25227287IPR003657WRKY domain
SMARTSM007742.5E-34228286IPR003657WRKY domain
PfamPF031061.4E-24229285IPR003657WRKY domain
PROSITE profilePS5081123.192229287IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-37371445IPR003657WRKY domain
SuperFamilySSF1182902.75E-29377445IPR003657WRKY domain
PROSITE profilePS5081137.413380445IPR003657WRKY domain
SMARTSM007747.0E-40385444IPR003657WRKY domain
PfamPF031064.0E-26386443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MSARPPPPPR PHLALPPRSA AESLFTGAGD ASPGPLTLAS ALFPSDADAG GGGASSGASG  60
AASFTQLLTG SFAPQQQQQR QHEAAERGRG GGVARAGPAL SVAPPASAAS GASVFTVPPG  120
LSPSGLLDSP GLLFSPAMGG FGMSHQQALA QVTAQASHSP LRMLDHIEQP SFSAAGASSG  180
ALQPMNSSAS MTGMPDMAIT PANNDNASLQ SAEASQRYQV NAPVDKPADD GYNWRKYGQK  240
VVKGSDCPRS YYKCTHPNCP VKKKVEHAED GQISEIIYKG KHNHQRPPNK RAKDGNSSAA  300
DQNDQSNDTT SGLSGAKRDQ DAIYGMSEQV SGLSDGDDMD DGESRPHEAD DADNESKRRN  360
IQISSQRTLS EPKIIVQTTS EVDLLDDGYR WRKYGQKVVK GNPHPRSYYK CTFAGCNVRK  420
HIERASSDPK AVITTYEGKH NHEPPVGRGG SQNAGMSQQK GQNSISSNQH YSNTNQMPIG  480
ILQFKSEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-39219445877Probable WRKY transcription factor 4
2lex_A6e-39219445877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341960.0BT034196.1 Zea mays full-length cDNA clone ZM_BFc0028G06 mRNA, complete cds.
GenBankBT0538110.0BT053811.1 Zea mays full-length cDNA clone ZM_BFb0199A02 mRNA, complete cds.
GenBankBT0548220.0BT054822.1 Zea mays full-length cDNA clone ZM_BFb0078G18 mRNA, complete cds.
GenBankKJ7285320.0KJ728532.1 Zea mays clone pUT6837 WRKY transcription factor (WRKY62) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807657.10.0probable WRKY transcription factor 3
TrEMBLA0A2S3HE780.0A0A2S3HE78_9POAL; Uncharacterized protein
STRINGPavir.Ca02393.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-106WRKY DNA-binding protein 3