PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04144.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 27842.5 Da    PI: 8.4935
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04144.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.83.2e-241664250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    rien+  rqvtfskRr g+ KKA EL vLCda+va+++fs +g+l++++
  Pahal.C04144.1 16 RIENSVSRQVTFSKRRRGLAKKARELAVLCDADVALLVFSDKGRLHDFA 64
                    8**********************************************97 PP
2K-box851.5e-28931801097
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      e+++ +++ ++ kL+++ie Lq++qR+l+Ge+LesL+++e qqLe+q++++l++iRs+K+++ll++ieel+kke+ l e+n+ L+k+
  Pahal.C04144.1  93 PEETQGNMSYDHIKLRSKIEALQKSQRNLMGEQLESLTFREVQQLEHQIDSALRSIRSRKDHVLLNSIEELRKKERFLMEQNTLLEKE 180
                     5777899****************************************************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-29766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.184767IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-28889IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-25929IPR002100Transcription factor, MADS-box
PROSITE patternPS003500963IPR002100Transcription factor, MADS-box
CDDcd002652.84E-321180No hitNo description
PfamPF003198.7E-241663IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-252944IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-254465IPR002100Transcription factor, MADS-box
PfamPF014866.7E-2595180IPR002487Transcription factor, K-box
PROSITE profilePS5129715.55897188IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRGRGRGRG KVEVWRIENS VSRQVTFSKR RRGLAKKARE LAVLCDADVA LLVFSDKGRL  60
HDFAAHDGSM ERILDRYERY LLCEGGDVME DRPEETQGNM SYDHIKLRSK IEALQKSQRN  120
LMGEQLESLT FREVQQLEHQ IDSALRSIRS RKDHVLLNSI EELRKKERFL MEQNTLLEKE  180
KAALLDPSLH AKNSPASSTS AEGAAVPNLN ICAADSDDEP APPPAAPHGA ATGLPWWLLR  240
PPASGQRGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-17880272Myocyte-specific enhancer factor 2B
1tqe_Q3e-17880272Myocyte-specific enhancer factor 2B
1tqe_R3e-17880272Myocyte-specific enhancer factor 2B
1tqe_S3e-17880272Myocyte-specific enhancer factor 2B
6c9l_A3e-17880272Myocyte-specific enhancer factor 2B
6c9l_B3e-17880272Myocyte-specific enhancer factor 2B
6c9l_C3e-17880272Myocyte-specific enhancer factor 2B
6c9l_D3e-17880272Myocyte-specific enhancer factor 2B
6c9l_E3e-17880272Myocyte-specific enhancer factor 2B
6c9l_F3e-17880272Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9750671e-180EU975067.1 Zea mays clone 466497 MADS-box transcription factor 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806918.11e-180MADS-box transcription factor 20-like
SwissprotQ2QQA35e-77MAD20_ORYSJ; MADS-box transcription factor 20
TrEMBLA0A2S3HED30.0A0A2S3HED3_9POAL; Uncharacterized protein
STRINGPavir.Cb00838.1.p4e-92(Panicum virgatum)
STRINGSi025315m3e-93(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146432121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-42AGAMOUS-like 8