PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04193.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 313aa    MW: 32807.2 Da    PI: 5.3924
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04193.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.38.7e-25109169259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqKe+++s++p++Y+rCt++   +C ++++v+r+++dp+++ +tY g H+++
  Pahal.C04193.1 109 EDGHSWRKYGQKEIQNSKHPKAYFRCTHKydqQCAAQRQVQRCDDDPDAFRVTYIGVHTCR 169
                     8***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-2695171IPR003657WRKY domain
SuperFamilySSF1182907.72E-25102171IPR003657WRKY domain
PROSITE profilePS5081120.162103171IPR003657WRKY domain
SMARTSM007741.7E-34108170IPR003657WRKY domain
PfamPF031067.0E-23109169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAAAAAPYAQ VIEDMRRVRD LATQLQGLLR DSPEAGRLVD QILHAMSRAI ETARAAAAAE  60
EGSEGQSEVT CAGSGAGKRK AAGGGDKRAA CRRRSQNSSI VTVTVKDIED GHSWRKYGQK  120
EIQNSKHPKA YFRCTHKYDQ QCAAQRQVQR CDDDPDAFRV TYIGVHTCRD PAAVAPVVLH  180
SADELHAGSR LISFAPNASA TTASTTTTGN TSQQGDRKDA ALLAGLRPLK LEAGAGAGEQ  240
EEVLSSLSPA GSSAAAEAAR NAAATPGLQG DVTSGLQHCY GGGLADMAPF DDDTFDLDDL  300
VGFGFDQGQD DF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-37102169269OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586310.0KU058631.1 UNVERIFIED: Panicum miliaceum WRKY27-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807531.10.0probable WRKY transcription factor 70
TrEMBLA0A2S3HD470.0A0A2S3HD47_9POAL; Uncharacterized protein
STRINGPavir.Ca02012.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.18e-18WRKY DNA-binding protein 70