PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C04322.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 568aa MW: 60290.2 Da PI: 6.3642

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04322.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.4	3.6e-14	115	174	3	62
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e kr r+ +NRe+A sRqRKk+++eeLe kvk+++a +L +++ + e lk++ Pahal.C04322.1 115 EAKRRARLVRNRESAHLSRQRKKQYVEELEGKVKAMQATIADLSARISCVTAENTVLKQQ 174 78*********************************************9999999888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-13	112	177	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.002	115	175	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.1E-13	115	175	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.38E-13	117	175	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.0E-16	117	175	No hit	No description
CDD	cd14704	2.82E-21	118	168	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence Send to blast
MAEPTLLAPD PFADLPFPEF QAPVDGGNFA FEDFDLEDLD LDVDFDLDLF ASDGQLSQPP 60 PLATSSSTAG SPEGGSSSSG AGGDGGLRNE ESSESCSRSA SVTDGSGKGK GEDDEAKRRA 120 RLVRNRESAH LSRQRKKQYV EELEGKVKAM QATIADLSAR ISCVTAENTV LKQQLGGAAG 180 TAPPLPMYPA VYPLPMPWMH PAYAMRGSQV PLVPIPRLKP QQPAPATAEP PAKKARKTKK 240 VASVSLLGLL CLVMLCGCLI PAVNRMYGSV DGGEGAAFGP SHHGRVLAVE GPRDSVSDSI 300 DPKPPQSTSE TLPALLYLPK NGKHVKINGN LVIKSIVASE KASLRMSGYD GKSPRNQGKE 360 ETSLAIPGYV ASLEAGEVMD STTGMKNKPM ALAPADGNMY REDDGLLPQW FSEAMSGPLL 420 SSGMCTEVFQ FDVSPSSAHA NGIVPVYSNA MPNSMQNFTE NLPSAHPHTV KNRRISYSEA 480 IPLRGSTSNN TERLKTPPKN ESFGSMKPVS SVVVSVLADP REVGEGNGEG RISSKSLSRI 540 FVVVLIDSVK YVTYSCVLPF KNHSPHL*

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence Send to blast

MAEPTLLAPD PFADLPFPEF QAPVDGGNFA FEDFDLEDLD LDVDFDLDLF ASDGQLSQPP  60
PLATSSSTAG SPEGGSSSSG AGGDGGLRNE ESSESCSRSA SVTDGSGKGK GEDDEAKRRA  120
RLVRNRESAH LSRQRKKQYV EELEGKVKAM QATIADLSAR ISCVTAENTV LKQQLGGAAG  180
TAPPLPMYPA VYPLPMPWMH PAYAMRGSQV PLVPIPRLKP QQPAPATAEP PAKKARKTKK  240
VASVSLLGLL CLVMLCGCLI PAVNRMYGSV DGGEGAAFGP SHHGRVLAVE GPRDSVSDSI  300
DPKPPQSTSE TLPALLYLPK NGKHVKINGN LVIKSIVASE KASLRMSGYD GKSPRNQGKE  360
ETSLAIPGYV ASLEAGEVMD STTGMKNKPM ALAPADGNMY REDDGLLPQW FSEAMSGPLL  420
SSGMCTEVFQ FDVSPSSAHA NGIVPVYSNA MPNSMQNFTE NLPSAHPHTV KNRRISYSEA  480
IPLRGSTSNN TERLKTPPKN ESFGSMKPVS SVVVSVLADP REVGEGNGEG RISSKSLSRI  540
FVVVLIDSVK YVTYSCVLPF KNHSPHL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000305\|PubMed:22050533}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU973938	0.0	EU973938.1 Zea mays clone 424664 DNA binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800125.1	0.0	bZIP transcription factor 60-like
Swissprot	Q8LIB3	0.0	BZP60_ORYSJ; bZIP transcription factor 60
TrEMBL	A0A2S3H4T7	0.0	A0A2S3H4T7_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EZC2	0.0	A0A2T7EZC2_9POAL; Uncharacterized protein
STRING	Pavir.Ba00049.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11179	30	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	4e-70	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.C04322.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Oono Y, et al. Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide. Plant Biotechnol. J., 2010. 8(6): p. 691-718 [PMID:20331531] Hu J, et al. The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding. Plant Physiol., 2011. 156(2): p. 856-72 [PMID:21487048] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]