PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C04387.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 180aa MW: 18671.6 Da PI: 11.5614

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04387.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.8	2.5e-05	35	78	1	46
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLek 46 rrr e+ rrRR+r+ ++eL +lP+ + +s+ + i+ Pahal.C04387.1 35 RRRRDREVQRRRRARVSALYAELGAMLPSlP---TSRPATQEKIVDA 78 6777899**********************55...6666666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.47E-7	33	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.591	34	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-4	35	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MATAAAAGGL PLELSLDTVA APAAATTAES AVERRRRRDR EVQRRRRARV SALYAELGAM 60 LPSLPTSRPA TQEKIVDAAK ARVEALEDTA AALQACRGAP RPGREVALSC GTVTVSARLP 120 SPKPAGALRR VVEAFERRGA RVLMATMARH GGAVVVTVTA AAAALEVVEM IRADIASIN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	32	38	ERRRRRD
2	33	46	RRRRRDREVQRRRR
3	37	46	RDREVQRRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808654.1	1e-118	uncharacterized protein LOC112886855
TrEMBL	A0A2S3HEA9	1e-116	A0A2S3HEA9_9POAL; Uncharacterized protein
STRING	Pavir.J14592.1.p	3e-65	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9141	19	31

Link Out ? help Back to Top
Phytozome	Pahal.C04387.1