PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04388.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 174aa    MW: 17741.3 Da    PI: 8.256
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04388.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.0003431731154
                    HHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH 11 rRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                      R+ +   f+eL  +lP+ +  ++++  s  ei+  A+e +k L
  Pahal.C04388.1 31 GHRRTVSALFAELGAMLPNdL--PTNRPASREEIVDAATERVKVL 73
                    568889999**********76..69999***********988866 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MAGGGLLPLD LSLATAGASA SAGERRAGPR GHRRTVSALF AELGAMLPND LPTNRPASRE  60
EIVDAATERV KVLEDTAAVL ETYRAVRGAG AGAAPRPEVA VAVGTVCFCA RLPAPRPGSL  120
TRVLEAFHRR GVEVLVATVA RHGHGGAAVV TVNAAAAPPE VLELIRADIA DIY*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9653793e-60EU965379.1 Zea mays clone 285663 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808264.11e-116uncharacterized protein LOC112886545
TrEMBLA0A2S3HEQ21e-114A0A2S3HEQ2_9POAL; Uncharacterized protein
STRINGSi025174m1e-73(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91411931