PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C04509.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 217aa MW: 23429.6 Da PI: 10.9588

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04509.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.5	5.4e-32	98	151	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Pahal.C04509.2 98 PRMRWTTALHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 151 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.5E-16	96	151	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-28	96	151	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-23	98	151	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-7	99	150	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MSIRTSRATT MATPDLSLHI SPPSPPEAAG EMQAVEPRLL LGLELDTAAA KTDDAAAQRH 60 GGLQAQQQRL LHQPSQTAHG FKKSSGGGGG RRRSARAPRM RWTTALHAHF VHAVELLGGH 120 ERATPKSVLE LMNVKDLTLA HVKSHLQMYR TVKGTDRSCV AGLGQQARDM AFLRRGAGEV 180 DGFDVFNSSR SVNTTTTFNN YTNTARLAHC ISFLPK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	99	153	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	99	153	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	99	153	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	99	153	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	99	153	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	99	153	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	99	153	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	99	153	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU968468	5e-84	EU968468.1 Zea mays clone 321144 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805465.1	1e-146	uncharacterized protein LOC112884302
TrEMBL	A0A2S3HF18	1e-145	A0A2S3HF18_9POAL; Uncharacterized protein
STRING	Pavir.J09156.1.p	1e-104	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	4e-38	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.C04509.2