PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04512.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 362aa    MW: 41096.5 Da    PI: 8.0386
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04512.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.6e-1838126299
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     fk + +   +++g  ++p kf+++++g+ +++    l+ +sg++W + +  +k++++ +l +GW++Fvka++L+e+D ++F+  g+s+f   v+v
  Pahal.C04512.1  38 FKLM-T-GDFAKG-TSIPEKFTKNFKGQITGG--FELKAPSGKTWHISV--DKSGDELFLMSGWEDFVKAHELQENDLLLFTCCGNSSF--QVQV 123
                     5555.3.334444.69******9998887787..7777***********..*******************************9999999..9999 PP

                     E-S CS
              B3  97 frk 99 
                     f++
  Pahal.C04512.1 124 FEA 126
                     876 PP
2B340.93.8e-13256352399
                     EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
              B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                     +vl++++  ++ + l++p +fa++h  k  +s +++l    +  +W v + y+ +  r +      +Fv++n+L+egD++vF+l++  ++ ++ v
  Pahal.C04512.1 256 TVLKKKHIQRNkNSLIIPCRFAADHLDK--RSHDIILHRpNRKGKWLVSYYYSCYM-RSFQNLAFFKFVRDNKLCEGDICVFELMKGkRRVTMAV 347
                     55555555555478***********544..56699999945559******554444.4445667899****************997769999999 PP

                     EEE-S CS
              B3  95 kvfrk 99 
                     +v+rk
  Pahal.C04512.1 348 HVIRK 352
                     99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-2130129IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.54934127IPR003340B3 DNA binding domain
CDDcd100172.74E-1736124No hitNo description
Gene3DG3DSA:2.40.330.109.4E-2136129IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.8E-1137127IPR003340B3 DNA binding domain
PfamPF023621.1E-1537126IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.5E-18246352IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-16247352IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-12252351No hitNo description
SMARTSM010190.001254353IPR003340B3 DNA binding domain
PfamPF023621.6E-10254352IPR003340B3 DNA binding domain
PROSITE profilePS508639.742255353IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MQQEHGQASI VEKGCESCRK WQEHYYWEHM DVSTIRFFKL MTGDFAKGTS IPEKFTKNFK  60
GQITGGFELK APSGKTWHIS VDKSGDELFL MSGWEDFVKA HELQENDLLL FTCCGNSSFQ  120
VQVFEASGCE RVSSIFGNRI GPDMCKHVNN IAGQHGMHYS QNDSEDTTTP SQLVGSPHNA  180
SSSKKSSGKT KPSEPENPNT SNFIVNHSAI GDEDSDDECA NSNCYYSMFA NRLRDEEKEE  240
IIGLASIRPN NPAFVTVLKK KHIQRNKNSL IIPCRFAADH LDKRSHDIIL HRPNRKGKWL  300
VSYYYSCYMR SFQNLAFFKF VRDNKLCEGD ICVFELMKGK RRVTMAVHVI RKASDRFILV  360
G*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808344.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-136Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2S3HF070.0A0A2S3HF07_9POAL; Uncharacterized protein
STRINGPavir.Cb00511.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-29B3 family protein