PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C04513.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 318aa MW: 36915.2 Da PI: 8.8395

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04513.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.1	3.3e-18	40	110	15	89
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +++p kf+++++g+ ++ l l+ +sg++W v + +k++++ +lt+GWk+Fvka++Lke+D ++F+ + Pahal.C04513.2 40 GISIPAKFVKNFNGQITK--GLDLKVPSGETWHVCV--DKRDDELLLTSGWKDFVKAHELKENDLLIFTCRAGQH 110 389****999888555..5***********..****************************9544344 PP
2	B3	42.1	1.5e-13	212	308	3	99
EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS B3 3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 vl +s+ ++ + l++p +fa++h ++ ++ +++l ++ +W+v++ y+ + ++ l +Fv+ n+L+egD +vF+l++ ++ +++ Pahal.C04513.2 212 AVLQKSHCQRRsNFLIVPSRFAADHLQE--RTEEIILCRpSRKDKWSVRYYYKTYTRGfQSL--PFFKFVHGNKLREGDACVFELMKGaKRVTMR 302 5666666665547789******9433..33467776626669**886666663444..4999************99877** PP EEEE-S CS B3 94 vkvfrk 99 v+v+rk Pahal.C04513.2 303 VHVIRK 308 *997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.16E-19	22	105	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.843	26	120	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.7E-18	28	106	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.54E-17	28	104	No hit	No description
SMART	SM01019	1.8E-6	29	119	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.1E-15	39	112	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.7E-19	202	308	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.96E-17	203	307	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.12E-14	208	307	No hit	No description
SMART	SM01019	2.2E-10	210	309	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.0E-12	210	308	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.461	211	309	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MMVEKGCESC REWREHYYRE HMDVTKIRFF KFMTGDFVRG ISIPAKFVKN FNGQITKGLD 60 LKVPSGETWH VCVDKRDDEL LLTSGWKDFV KAHELKENDL LIFTCRAGQH AEPYTLTDSE 120 EASMAPQLVG STHMASTSKK YNCKTKPRKE PQSLNSSSYH VKHEGIEEEE SDDMYADSKF 180 YYSRMANQFT VEEKENILSL ASIQPENPAF VAVLQKSHCQ RRSNFLIVPS RFAADHLQER 240 TEEIILCRPS RKDKWSVRYY YKTYTRGFQS LPFFKFVHGN KLREGDACVF ELMKGAKRVT 300 MRVHVIRKVG DRFVLVG*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808343.1	0.0	B3 domain-containing protein Os12g0592300-like
Swissprot	Q2QMT2	1e-126	Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBL	A0A2S3HF19	0.0	A0A2S3HF19_9POAL; Uncharacterized protein
STRING	Si024966m	1e-163	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	3e-20	B3 family protein

Link Out ? help Back to Top
Phytozome	Pahal.C04513.2