PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04513.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 229aa    MW: 26352.8 Da    PI: 6.7853
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04513.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.8e-18391101389
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     +  +++p kf+++++g+ ++   l l+ +sg++W v +  +k++++ +lt+GWk+Fvka++Lke+D ++F+    + 
  Pahal.C04513.3  39 R-GISIPAKFVKNFNGQITK--GLDLKVPSGETWHVCV--DKRDDELLLTSGWKDFVKAHELKENDLLIFTCRAGQH 110
                     3.389******999888555..5***************..*******************************554344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.06E-1922105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.84326120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-1928106IPR015300DNA-binding pseudobarrel domain
CDDcd100178.75E-1928104No hitNo description
SMARTSM010191.8E-629119IPR003340B3 DNA binding domain
PfamPF023621.1E-1539112IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MMVEKGCESC REWREHYYRE HMDVTKIRFF KFMTGDFVRG ISIPAKFVKN FNGQITKGLD  60
LKVPSGETWH VCVDKRDDEL LLTSGWKDFV KAHELKENDL LIFTCRAGQH AEPYTLTDSE  120
EASMAPQLVG STHMASTSKK YNCKTKPRKE PQSLNSSSYH VKHEGIEEEE SDDMYADSKF  180
YYSRMANQFT VEEKENILSL ASIQPENPAF VAVLQKSHCQ RRSNFLVT*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808343.11e-164B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT22e-82Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2S3HFB71e-173A0A2S3HFB7_9POAL; Uncharacterized protein
STRINGPavir.J16679.1.p1e-135(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-14B3 family protein