PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04513.5
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 266aa    MW: 30399.3 Da    PI: 6.733
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04513.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.19.3e-20401171598
                     -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +++p kf+++++g+ ++   l l+ +sg++W v +  +k++++ +lt+GWk+Fvka++Lke+D ++F+  g+s+f   +++f+
  Pahal.C04513.5  40 GISIPAKFVKNFNGQITK--GLDLKVPSGETWHVCV--DKRDDELLLTSGWKDFVKAHELKENDLLIFTCRGNSSF--EISIFE 117
                     389******999888555..5***************..*******************************9998999..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-2322121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.74726119IPR003340B3 DNA binding domain
CDDcd100173.90E-2128116No hitNo description
Gene3DG3DSA:2.40.330.101.4E-2228121IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-1329119IPR003340B3 DNA binding domain
PfamPF023626.7E-1739118IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MMVEKGCESC REWREHYYRE HMDVTKIRFF KFMTGDFVRG ISIPAKFVKN FNGQITKGLD  60
LKVPSGETWH VCVDKRDDEL LLTSGWKDFV KAHELKENDL LIFTCRGNSS FEISIFEASS  120
CEKLSSLFAN RIGPNLHKHL NDTAGQHAEP YTLTDSEEAS MAPQLVGSTH MASTSKKYNC  180
KTKPRKEPQS LNSSSYHVKH EGIEEEESDD MYADSKFYYS RMANQFTVEE KENILSLASI  240
QPENPAFVAV LQKSHCQRRS NFLVT*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808343.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT28e-94Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2S3HF490.0A0A2S3HF49_9POAL; Uncharacterized protein
STRINGPavir.J16679.1.p1e-168(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-16B3 family protein