PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04515.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 356aa    MW: 40720.9 Da    PI: 8.2286
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04515.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.13.2e-1828115199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk +     +++g +++p kfa++++g   +   + l+++sg++W++++  +k+ ++ +l + W++Fvka++L+e+D +vF+ +g+s+f   v 
  Pahal.C04515.1  28 FFKLM--TGDFAKG-ISIPEKFAKNFDGT--G--SIDLKTPSGETWNIRV--DKHVDELFLVSRWEDFVKAHRLRENDLLVFTCSGDSSF--DVL 111
                     55555..4445555.9*******888766..5..59**************..*******************************9999999..888 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f++
  Pahal.C04515.1 112 IFEA 115
                     8865 PP
2B342.89.6e-14248346199
                     EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
              B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                     f++vl  s+v ++ + l++p +f+++h  +k    ++tl    +  +W vk++y ++ +++      + Fv++n+L+egD++ F+l++  ++ ++
  Pahal.C04515.1 248 FVTVLQMSHVRRKsNFLIFPSRFVADHLDSKL--HEITLVRpNRKDKWCVKYCYGRGAQGIR-NYTFSMFVQENRLREGDICAFELMKGaRRVTM 339
                     5566666666655478899********55543..378888835669*******988888843.33577*****************9977799999 PP

                     EEEEE-S CS
              B3  93 vvkvfrk 99 
                     +v+++rk
  Pahal.C04515.1 340 TVHAIRK 346
                     9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.84425116IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-1927120IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-1727113No hitNo description
Gene3DG3DSA:2.40.330.108.0E-1927118IPR015300DNA-binding pseudobarrel domain
PfamPF023625.1E-1528114IPR003340B3 DNA binding domain
SMARTSM010192.0E-1228116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-17240346IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-15243346IPR015300DNA-binding pseudobarrel domain
CDDcd100173.77E-13246345No hitNo description
PfamPF023621.2E-12248346IPR003340B3 DNA binding domain
SMARTSM010196.5E-10248347IPR003340B3 DNA binding domain
PROSITE profilePS508639.812249345IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MVHKGCESCR EWQEHYYWEH MDVTKIRFFK LMTGDFAKGI SIPEKFAKNF DGTGSIDLKT  60
PSGETWNIRV DKHVDELFLV SRWEDFVKAH RLRENDLLVF TCSGDSSFDV LIFEASGCEK  120
VSSLFGSSTG PDMRKRLDDM ADRGKPGKQA EHYALTDSED TTTRSHLAGF PHHASTSKKS  180
GSRNPRKMPE SPNSSSDHVK PDAIGEEDSD EEHANSNYYY SRVANRLSDE EKEKIISLAS  240
IRPDNPAFVT VLQMSHVRRK SNFLIFPSRF VADHLDSKLH EITLVRPNRK DKWCVKYCYG  300
RGAQGIRNYT FSMFVQENRL REGDICAFEL MKGARRVTMT VHAIRKVDCR FVRVG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808342.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-132Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2S3HF080.0A0A2S3HF08_9POAL; Uncharacterized protein
STRINGPavir.Ca02538.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-30B3 family protein