PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04516.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 450aa    MW: 50471 Da    PI: 7.5658
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04516.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.11.3e-12541133699
                     EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +led++g+ ++vk+  ++  ++ v++ GW   ++a +L++gD+vvF+++g+s f  +v +f+ 
  Pahal.C04516.1  54 KMLEDPDGNLYSVKV--SQDLNKLVFRYGWGALCSAYELEQGDMVVFRYSGDSHF--KVLIFDP 113
                     489************..999999****************************9999..9999885 PP
2B340.74.2e-13352431784
                     .-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE...E CS
              B3   7 psdvlksgrlvlpkkfaeeh.ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk...l 84 
                     ++    +  +++ k+fa eh     + ++t++l+ +    sWe +l++r+  + + l +GWk+Fv++n L++g+ ++F+    
  Pahal.C04516.1 352 TAKKRGNESMCFNKDFAMEHlP---RVPQTMRLRRPGVsCSWEAELQVRNECKVHQLCRGWKQFVDDNALRQGELCLFQplgG 431
                     4445556679999****99943...34669*****6645****************************************5321 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.007221114IPR003340B3 DNA binding domain
SuperFamilySSF1019361.1E-1536116IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-1441112No hitNo description
Gene3DG3DSA:2.40.330.105.9E-1552116IPR015300DNA-binding pseudobarrel domain
PfamPF023627.4E-1054112IPR003340B3 DNA binding domain
PROSITE profilePS5086310.3256114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-12224321IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-13225311IPR015300DNA-binding pseudobarrel domain
CDDcd100176.70E-9229324No hitNo description
PROSITE profilePS508639.305230326IPR003340B3 DNA binding domain
SMARTSM010190.0012231326IPR003340B3 DNA binding domain
PfamPF023622.3E-7234322IPR003340B3 DNA binding domain
PROSITE profilePS5086310.292346449IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-14348447IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-14349447IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-10350432IPR003340B3 DNA binding domain
SMARTSM010191.1E-7350449IPR003340B3 DNA binding domain
CDDcd100175.40E-11361426No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MASQDHQDYG MSAHKMSGNS CKRCSHCDSH YYWHHLDDRQ KHFFKLMLGD FQQKMLEDPD  60
GNLYSVKVSQ DLNKLVFRYG WGALCSAYEL EQGDMVVFRY SGDSHFKVLI FDPSGCEKEF  120
FRIVMNPSCG VRQRVIPHEQ TPSGEGLARH RTGELSHSRK ASKMTPADSP SQRSTEEMTY  180
PDDTVSPMDS GVLQTSSGAR AILAKGCILT SAQKAKLDAF EKKIRPGIPL YVTNMNKANL  240
SNGYMVICKD YSDKYLPHED QTITLCHSPG SRKRDANLKI SADGAYIFST GWRSLARGNE  300
LQDGDAWALE ASMSEGRVTV SVHPLHGSHN PPEEESPRQT PGIQAKTFVF VTAKKRGNES  360
MCFNKDFAME HLPRVPQTMR LRRPGVSCSW EAELQVRNEC KVHQLCRGWK QFVDDNALRQ  420
GELCLFQPLG GGGEDDGELA MNVHILRGH*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806972.10.0B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A2T7EIN70.0A0A2T7EIN7_9POAL; Uncharacterized protein
STRINGPavir.Ca02537.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-17B3 family protein