PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04518.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 72aa    MW: 8100.16 Da    PI: 4.5815
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04518.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.8e-1011594495
                    -EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
              B3 44 rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95
                     +We  l    ++g y l++ W++F k+n L++gD+++F+l ++ + +  +++
  Pahal.C04518.1 11 SEWEALL--ISSDGLYQLGGRWNQFIKDNMLRQGDICLFELLKEnEPQ--LIG 59
                    6899999..777777*************************98753444..555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.052164IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-10958IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.6E-10956IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-71058IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MNPTDSPWHK SEWEALLISS DGLYQLGGRW NQFIKDNMLR QGDICLFELL KENEPQLIGG  60
CANQTTHPLV T*