PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04539.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 260aa    MW: 26793.9 Da    PI: 7.1921
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04539.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0015173192120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ Cgk F++   L  H 
  Pahal.C04539.1 173 HECNVCGKAFPTGQALGGHK 192
                     78*********988886665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.17E-9102125No hitNo description
Gene3DG3DSA:3.30.160.608.8E-5102127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.08103125IPR015880Zinc finger, C2H2-like
PfamPF139123.7E-12103127IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.427103130IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SuperFamilySSF576672.17E-9168195No hitNo description
PfamPF139122.6E-13172197IPR007087Zinc finger, C2H2
SMARTSM003550.063173195IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.388173195IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.9E-5173195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAVEAVLDAA ATPSPEVVFA AAAAPATSSG GDEEEVEGQE AKAVTDQQQR AEGWAKRKRS  60
RRRREQLPRE PTEEEYLALC LVMLARGRRD VAAPAPPHQQ EPHACSVCGK AFASYQALGG  120
HKASHRTKPP APVATASTAA GAEQQQQQHA APAPSSSPAG SAGEGGKPAA AAHECNVCGK  180
AFPTGQALGG HKRCHYDGTI GSAAAPARSS RVTSSTAVGG FDLNLPALPD VPERCGAVPE  240
EEEVLSPLAF KKPRFMIPA*
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557423e-52EU955742.1 Zea mays clone 1544525 zinc-finger protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808181.10.0zinc finger protein 1-like
SwissprotQ424301e-42ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A2S3HEY60.0A0A2S3HEY6_9POAL; Uncharacterized protein
STRINGPavir.J06981.1.p1e-105(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.15e-30salt tolerance zinc finger