PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04543.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 397aa    MW: 42336.5 Da    PI: 4.1745
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04543.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-195099255
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Pahal.C04543.1 50 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 99
                    789******.7*********33....35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.66E-3049106No hitNo description
Gene3DG3DSA:3.30.730.102.4E-2750106IPR001471AP2/ERF domain
SMARTSM003801.7E-3650113IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-1950107IPR016177DNA-binding domain
PROSITE profilePS5103219.59950107IPR001471AP2/ERF domain
PfamPF008479.9E-145099IPR001471AP2/ERF domain
PRINTSPR003675.7E-85162IPR001471AP2/ERF domain
PRINTSPR003675.7E-87389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MARKRKASDS VDIEVGNDVL NSPPLLPSTD ACAWVSVAVA AAAQQRGRKR FVGVRQRPSG  60
RWVAEIKDTI QKIRVWLGTF DTAEEAARAY DEAACLLRGS NTRTNFWPRP SPAAVAAAAA  120
HPVQPPPPLP AVASSPAPAL PPKVTNLLLL RLRARNQQLF NATAAQQEAA LLQGPLCEGK  180
YGGGDGEECA FQVDDFLSYD CGSSDGNSSQ EMEDEEEEEE EEEEEEELDF QFMDQHAASP  240
TAGCEGGLCS PFDVVAAELG GAVEADDGEP ESAVQELMRR RMDYERKISA SLYALSGVSE  300
CLRMRHGDDA AAGVRDQLTG LREACRKKQR DEVQQQHQEQ APSPESAEDG NGKAAQEECS  360
AGSGAPEAAS SSSEASDGDG DSDVLLWSSL DLAPIC*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809285.10.0ethylene-responsive transcription factor ERF118-like
TrEMBLA0A2S3HEX10.0A0A2S3HEX1_9POAL; Uncharacterized protein
STRINGPavir.Cb00448.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-22related to AP2 11