PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04564.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 549aa    MW: 63145.3 Da    PI: 7.0098
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04564.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.72.2e-103011935127
             NAM  35 kevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdk.evlsk..kgel...........vglkktLvfykgrap 114
                     +++++ +++Pw+Lp++          F+   +k++    ++r  t+sgyW+++  d  ++ s+  +  +            g+++tL fy   ++
  Pahal.C04564.1  30 ANAGLAEADPWHLPAQ----------FVMLMQKKP---GSSRlWTHSGYWEEKEDDFiAIRSEggG--EgssspssspcyEGVRRTLEFY---DH 106
                     4557788888888821..........444444444...34555899*****887764144444541..256678889999**********...78 PP

             NAM 115 kgektdWvmheyr 127
                     +g+ktdWvmhey+
  Pahal.C04564.1 107 NGTKTDWVMHEYS 119
                     999*********7 PP
2NAM27.11.2e-0834740473127
             NAM  73 rknratksgyWkatgk.dkevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyr 127
                       nr+t++g+W++  + dk +  +  +  l      glk+tL f+   + +g++tdW+m ey+
  Pahal.C04564.1 347 SLNRKTHQGRWEEIKSnDKLIAIRigQ--LpvpqyAGLKRTLEFH---HDDGTRTDWIMLEYH 404
                     468999******887725555555440..356666*********9...78899*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.4651139IPR003441NAC domain
SuperFamilySSF1019413.14E-1231139IPR003441NAC domain
PfamPF023657.9E-831119IPR003441NAC domain
PROSITE profilePS5080812.592237297IPR003656Zinc finger, BED-type
PfamPF028928.8E-6240286IPR003656Zinc finger, BED-type
SuperFamilySSF576671.67E-5241287No hitNo description
SMARTSM006142.1E-8241291IPR003656Zinc finger, BED-type
PROSITE profilePS510059.586289428IPR003441NAC domain
PfamPF023651.7E-7318404IPR003441NAC domain
SuperFamilySSF1019411.7E-11332426IPR003441NAC domain
SMARTSM006142.9E-10492544IPR003656Zinc finger, BED-type
PROSITE profilePS5080810.544492548IPR003656Zinc finger, BED-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MEPDGAAATL RNINDAMEET HRIAYRKLQA NAGLAEADPW HLPAQFVMLM QKKPGSSRLW  60
THSGYWEEKE DDFIAIRSEG GGEGSSSPSS SPCYEGVRRT LEFYDHNGTK TDWVMHEYSH  120
LEDDMFILDD MVLRKVFRKK RKDRVHSGLK RLDKVMEAYR EALAKHGTFH PLIIPYCEQQ  180
WLRGALGDDM KLIILGLKLY VVKRSLFDEV MPSLWEGCQE AESGCGEFPT ASSAPDGESD  240
DVWQHFTRIN TKDPDVVYAA CHRCDRVLRA HSKNGTSHLR RHLKTKTCTC NNNPSSTTED  300
QESLRELRAN LDLYKQGKME GRVVDSPDLN ASVDPWDLPT PRYFTSSLNR KTHQGRWEEI  360
KSNDKLIAIR IGQLPVPQYA GLKRTLEFHH DDGTRTDWIM LEYHQVDDYN TRDLLLEGSM  420
VFRKVIQIFK DAVKELEMMW NGDDEEEERY IGEREEEVKA CMSTLLRDCL LGEVGQSDQS  480
RVGKRKRTGA PGGRSEIWLY FTKIYTMDPD RVYAVCHCCD RCYKGHSKNG TSHLKRHNKT  540
CSSKHRKV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132141LRKVFRKKRK
2137142RKKRKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809703.10.0uncharacterized protein LOC112887673
TrEMBLA0A2S3HEX20.0A0A2S3HEX2_9POAL; Uncharacterized protein
STRINGPavir.J39504.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15166411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.19e-07NAC domain containing protein 83