PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04571.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 205aa    MW: 24020.2 Da    PI: 7.9172
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04571.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.43.2e-115814537127
             NAM  37 vdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdk.evlsk..kgel...........vglkktLvfykgrapkg 116
                     + + +++Pw+Lp+          f ++  +k++    ++r  t+sgyW+++  d  ++ s+  +  +            g+++tL fy   +++g
  Pahal.C04571.1  58 AVLAEADPWHLPA---------QFVMPV-QKKP---GSSRlWTHSGYWEEKEDDFiAIRSRggG--EgssspssspcyEGVRRTLEFY---EHNG 134
                     4566777888872.........144444.4444...34555899*****887764145554541..356678889999**********...7899 PP

             NAM 117 ektdWvmheyr 127
                     +ktdWvmhey+
  Pahal.C04571.1 135 TKTDWVMHEYS 145
                     9*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.53926165IPR003441NAC domain
PfamPF023651.7E-857145IPR003441NAC domain
SuperFamilySSF1019416.02E-1361165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEPDGAAATL RNINDAMEEV RRRSLSYRGW TIKEAMEDMR SGKWERRRIA YRTLQAKAVL  60
AEADPWHLPA QFVMPVQKKP GSSRLWTHSG YWEEKEDDFI AIRSRGGGEG SSSPSSSPCY  120
EGVRRTLEFY EHNGTKTDWV MHEYSHLDAN MFLQEDMVLR KVFNKKHTHR VHFILEHLEW  180
IMEAHRETLA KHSTFHPLII PYYM*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807168.11e-123uncharacterized protein LOC112885746
TrEMBLA0A2S3HFB81e-122A0A2S3HFB8_9POAL; Uncharacterized protein
STRINGPavir.J14337.1.p2e-75(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4105423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.16e-08NAC domain containing protein 36