PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04627.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 1217aa    MW: 135318 Da    PI: 7.9655
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04627.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.37.4e-1910341098259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS....STTEEEEEEES--SS- CS
            WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae....dpkvveitYegeHnhe 59  
                      +Dgy+WrKYGqK + +++fpr YYrCt++   +C+++k+v++++     +p +  ++Y ++H+++
  Pahal.C04627.1 1034 RDGYQWRKYGQKRIPETQFPRCYYRCTFHrerSCRATKQVQQCSVgdlcNPPLYGVMYFNQHTCD 1098
                      7**************************998999********987433337889999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525401.27E-51198471IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.0E-15214388IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009312.8E-49231498IPR002182NB-ARC
PRINTSPR003641.6E-13237252No hitNo description
PRINTSPR003641.6E-13309323No hitNo description
PRINTSPR003641.6E-13406420No hitNo description
SuperFamilySSF520588.5E-18533911IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.6E-14569860IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003641.6E-13708724No hitNo description
Gene3DG3DSA:2.20.25.809.5E-2110251099IPR003657WRKY domain
SuperFamilySSF1182908.76E-1910281099IPR003657WRKY domain
SMARTSM007746.8E-2710331099IPR003657WRKY domain
PROSITE profilePS5081115.05510351077IPR003657WRKY domain
PfamPF031066.2E-2010351098IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1217 aa     Download sequence    Send to blast
MGATMRVLNS YKAGTSFVAS VQTGLGEISS MEAPASPLDG TILKLPGKLD RLLRHGCALP  60
KGAADEIPLI KLDLEKIKAI SSNLQEDDHA MMVRCWRKEV RELSYDMEDF IDQYEHAAAM  120
NCASRSIRGR EIITRRRKNK TSLPWIREKL RQRLWMANKI REFSERAQEA LERHRLYNLD  180
AIAGSASLRC IDDAYPTSWN GTPCGEDKAY VGIDAAMENL EELLSMTHDQ EHQKLKVVSV  240
VGFGGIGKTT LAMELYRKLG QQFECRAFVR TAQKPDMRRI FISMLSQVRP HQPPDNWTVH  300
GLISTIRTHL QDKRYLIIVE DLWTTSTWDI VKHALPENNC CSRILTTTEI EDLALQSCDH  360
DPKYVYKMQP LGEDNSRKLF FSSVFGPQDE CPPELREISH DIIRKCGGLP LAIVTVANIL  420
SSQPGKQDRW DYVNKAIGYS LLTNPTWEGM KQIFDLSYNN LPQHLKACIL YTGLYEEDII  480
IWKDDLVNQW IAEGFIQATG GQDKKEIARS FFDRLINGKL ILPLDVNRNG EVLSCTVHHM  540
VLNLVIRCKS IEENFVTAIH HSQATTTLAD KVRRLSLQFG NAEDAITPTN MRLSHVRTLA  600
FSGLFKCLPS VVQFRLLQVL VLHFWADKDS ISFDITRISE LFRLRYLKVT TNVTLELHPQ  660
MRGLKSLETL KIDARVCAVP SDIVLLPGLL HLSLPAETSL PNWIGCMTPL RTLGYFDLSS  720
NSIQNVKSLV MLTNLGDLQL TCSTVQPENL NSKLQFVLTT IVGRLSNLKS LTLAPRAPSY  780
AKSIGATGMT VHGGFSSLSP APSLLRSLEV SPQICIFFYT PKSIGQLRKL CILKFGVRKI  840
DRDGIDVLRG LPALAVLSLY VQTKPAARIV IGKTGFPVIK YFKLKCCDPF LKFEEGAMPN  900
LLKLKLAFNA SNADQQSTIP VGIEYLSELK EVSAKIGGVG PEESHRRPAE LAFRDAFRVH  960
ASVQRVNVQC VKQIIECKDD QSSLTTVEYS PAPAGTSLLS SGWAHVSVAA SPYEPQTARW  1020
NCPRERTVTA SPHRDGYQWR KYGQKRIPET QFPRCYYRCT FHRERSCRAT KQVQQCSVGD  1080
LCNPPLYGVM YFNQHTCDTM AGCEPEAAAN PAMPAGLSGA GLVARQGGSL SLGLDERGVQ  1140
EEHERQAFVS SLVYAGDDDE LPQSSAGGRG TTSSAVTFDV AKGGASCAGA GGDAAVPETE  1200
AGDSPGVEDW YLSRPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C2e-42202752152706Disease resistance RPP13-like protein 4
6j5t_F2e-42202752152706Disease resistance RPP13-like protein 4
6j5t_G2e-42202752152706Disease resistance RPP13-like protein 4
6j5t_L2e-42202752152706Disease resistance RPP13-like protein 4
6j5t_O2e-42202752152706Disease resistance RPP13-like protein 4
6j5u_A2e-42202752152706Disease resistance RPP13-like protein 4
6j5v_A2e-42202752152706Disease resistance RPP13-like protein 4
6j5w_A2e-42202752152706Disease resistance RPP13-like protein 4
6j6i_C2e-42202752152706Disease resistance RPP13-like protein 4
6j6i_F2e-42202752152706Disease resistance RPP13-like protein 4
6j6i_G2e-42202752152706Disease resistance RPP13-like protein 4
6j6i_L2e-42202752152706Disease resistance RPP13-like protein 4
6j6i_O2e-42202752152706Disease resistance RPP13-like protein 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807801.10.0putative disease resistance RPP13-like protein 3 isoform X1
TrEMBLA0A2S3HFA80.0A0A2S3HFA8_9POAL; Uncharacterized protein
STRINGPavir.Ca02782.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27511933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.11e-16WRKY DNA-binding protein 62