PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04627.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 1197aa    MW: 133274 Da    PI: 7.8384
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04627.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.37.3e-1910141078259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS....STTEEEEEEES--SS- CS
            WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae....dpkvveitYegeHnhe 59  
                      +Dgy+WrKYGqK + +++fpr YYrCt++   +C+++k+v++++     +p +  ++Y ++H+++
  Pahal.C04627.2 1014 RDGYQWRKYGQKRIPETQFPRCYYRCTFHrerSCRATKQVQQCSVgdlcNPPLYGVMYFNQHTCD 1078
                      7**************************998999********987433337889999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525401.27E-51178451IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.9E-15194368IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009312.7E-49211478IPR002182NB-ARC
PRINTSPR003641.5E-13217232No hitNo description
PRINTSPR003641.5E-13289303No hitNo description
PRINTSPR003641.5E-13386400No hitNo description
Gene3DG3DSA:3.80.10.102.5E-14549840IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520471.88E-18550869No hitNo description
PRINTSPR003641.5E-13688704No hitNo description
Gene3DG3DSA:2.20.25.809.3E-2110051079IPR003657WRKY domain
SuperFamilySSF1182908.5E-1910081079IPR003657WRKY domain
SMARTSM007746.8E-2710131079IPR003657WRKY domain
PROSITE profilePS5081115.05510151057IPR003657WRKY domain
PfamPF031066.1E-2010151078IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1197 aa     Download sequence    Send to blast
MLLGLGEISS MEAPASPLDG TILKLPGKLD RLLRHGCALP KGAADEIPLI KLDLEKIKAI  60
SSNLQEDDHA MMVRCWRKEV RELSYDMEDF IDQYEHAAAM NCASRSIRGR EIITRRRKNK  120
TSLPWIREKL RQRLWMANKI REFSERAQEA LERHRLYNLD AIAGSASLRC IDDAYPTSWN  180
GTPCGEDKAY VGIDAAMENL EELLSMTHDQ EHQKLKVVSV VGFGGIGKTT LAMELYRKLG  240
QQFECRAFVR TAQKPDMRRI FISMLSQVRP HQPPDNWTVH GLISTIRTHL QDKRYLIIVE  300
DLWTTSTWDI VKHALPENNC CSRILTTTEI EDLALQSCDH DPKYVYKMQP LGEDNSRKLF  360
FSSVFGPQDE CPPELREISH DIIRKCGGLP LAIVTVANIL SSQPGKQDRW DYVNKAIGYS  420
LLTNPTWEGM KQIFDLSYNN LPQHLKACIL YTGLYEEDII IWKDDLVNQW IAEGFIQATG  480
GQDKKEIARS FFDRLINGKL ILPLDVNRNG EVLSCTVHHM VLNLVIRCKS IEENFVTAIH  540
HSQATTTLAD KVRRLSLQFG NAEDAITPTN MRLSHVRTLA FSGLFKCLPS VVQFRLLQVL  600
VLHFWADKDS ISFDITRISE LFRLRYLKVT TNVTLELHPQ MRGLKSLETL KIDARVCAVP  660
SDIVLLPGLL HLSLPAETSL PNWIGCMTPL RTLGYFDLSS NSIQNVKSLV MLTNLGDLQL  720
TCSTVQPENL NSKLQFVLTT IVGRLSNLKS LTLAPRAPSY AKSIGATGMT VHGGFSSLSP  780
APSLLRSLEV SPQICIFFYT PKSIGQLRKL CILKFGVRKI DRDGIDVLRG LPALAVLSLY  840
VQTKPAARIV IGKTGFPVIK YFKLKCCDPF LKFEEGAMPN LLKLKLAFNA SNADQQSTIP  900
VGIEYLSELK EVSAKIGGVG PEESHRRPAE LAFRDAFRVH ASVQRVNVQC VKQIIECKDD  960
QSSLTTVEYS PAPAGTSLLS SGWAHVSVAA SPYEPQTARW NCPRERTVTA SPHRDGYQWR  1020
KYGQKRIPET QFPRCYYRCT FHRERSCRAT KQVQQCSVGD LCNPPLYGVM YFNQHTCDTM  1080
AGCEPEAAAN PAMPAGLSGA GLVARQGGSL SLGLDERGVQ EEHERQAFVS SLVYAGDDDE  1140
LPQSSAGGRG TTSSAVTFDV AKGGASCAGA GGDAAVPETE AGDSPGVEDW YLSRPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C1e-42182732152706Disease resistance RPP13-like protein 4
6j5t_F1e-42182732152706Disease resistance RPP13-like protein 4
6j5t_G1e-42182732152706Disease resistance RPP13-like protein 4
6j5t_L1e-42182732152706Disease resistance RPP13-like protein 4
6j5t_O1e-42182732152706Disease resistance RPP13-like protein 4
6j5u_A1e-42182732152706Disease resistance RPP13-like protein 4
6j5v_A1e-42182732152706Disease resistance RPP13-like protein 4
6j5w_A1e-42182732152706Disease resistance RPP13-like protein 4
6j6i_C1e-42182732152706Disease resistance RPP13-like protein 4
6j6i_F1e-42182732152706Disease resistance RPP13-like protein 4
6j6i_G1e-42182732152706Disease resistance RPP13-like protein 4
6j6i_L1e-42182732152706Disease resistance RPP13-like protein 4
6j6i_O1e-42182732152706Disease resistance RPP13-like protein 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807801.10.0putative disease resistance RPP13-like protein 3 isoform X1
TrEMBLA0A2S3HF740.0A0A2S3HF74_9POAL; Uncharacterized protein
STRINGPavir.Ca02782.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.11e-16WRKY DNA-binding protein 62