PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C04635.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 202aa MW: 21936.4 Da PI: 7.1088

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04635.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.9	2.1e-09	172	199	3	30
HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 3 rahnerErrRRdriNsafeeLrellPka 30 ++h+ E+rRR +iN++f +L+ l+P + Pahal.C04635.1 172 QTHSRTEKRRRCKINEKFKTLQHLVPGC 199 79************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.14E-8	167	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.35	169	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.0E-9	172	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.04E-6	172	202	No hit	No description
Pfam	PF00010	4.5E-7	172	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
METTMNSQDS CPALYYSVNP SEAAGGGAEG ADAFLDKFGD RQSFGDLFDL VLWQGGARGS 60 SMEVQPAAGH LPPPSPAAAV ALPPSDDEMA AWLYPIFRGD HPGVAGHAAA ADDLQAAPNH 120 KREKVDDQQV ADHHMSEDKL PKTEEKCRAQ DSTSFLLRKK ATGGARKSHH AQTHSRTEKR 180 RRCKINEKFK TLQHLVPGCH NK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3L6RA39	1e-109	A0A3L6RA39_PANMI; Transcription factor PIF1-like
STRING	Si024311m	3e-47	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6283	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28800.1	3e-09	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.C04635.1