PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C04637.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 165aa MW: 17764.1 Da PI: 6.9209

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04637.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	5e-09	131	157	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 a n E+rRR riN++f L++l+P + Pahal.C04637.1 131 APNLTEKRRRCRINEKFKILQQLVPGC 157 67999********************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.02E-8	124	159	No hit	No description
SuperFamily	SSF47459	9.95E-8	127	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.22	127	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.0E-8	128	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.7E-7	131	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MMNSQGSGPA HYNYSVDPGK ATGCGRNGGG ADEGFLDMFG DRRSSGDLFD LVWQGRAGAT 60 SSIMEVQPSH LIPSLPPSEG EMAAWLCPVV RGDELVVTGP DDPTIPGDFD SMGERRKKAI 120 GGVRRSHHSE APNLTEKRRR CRINEKFKIL QQLVPGCDKV VLIL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002442458.1	3e-19	transcription factor APG
TrEMBL	A0A2T8KLV9	1e-114	A0A2T8KLV9_9POAL; Uncharacterized protein
STRING	Si024311m	6e-57	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16578	11	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-09	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	Pahal.C04637.1