PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04667.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 315aa    MW: 34040.6 Da    PI: 4.7117
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04667.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.22.3e-15122175457
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                      k+ rr+ +NRe+ArrsR+RK+  +  Le  v +L++eN +L k+l  ++++++
  Pahal.C04667.1 122 TKKMRRMLSNRESARRSRKRKQVHMTDLESQVSKLTSENASLLKRLADMTQKYK 175
                     6999***********************************999966666665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.1E-17119183IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.277121173IPR004827Basic-leucine zipper domain
PfamPF001701.9E-13122175IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.7E-14123175No hitNo description
SuperFamilySSF579591.69E-12123174No hitNo description
CDDcd147024.63E-18124174No hitNo description
PROSITE patternPS000360126141IPR004827Basic-leucine zipper domain
PfamPF124981.7E-24190295IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAGAGADDDV VEVSCGGDGR DPGAYAAVLK RRLDLYCAAV AKSMEAKSQE SSLGYPNSQA  60
SDTSQLISQA SFDDDGDGAT IVTNSNIIDH EDFRGNPANS GTSKEQSDDD GDLEENTDPA  120
NTKKMRRMLS NRESARRSRK RKQVHMTDLE SQVSKLTSEN ASLLKRLADM TQKYKDATLD  180
NRNLTVDVET MRRKVNIAEE AVRRLTGTTL LLSTTCDKTA SSMRLTSCPS DAGSASVTTE  240
DSMEHFLQAQ LQSDLIKLDL PNAAILLTSG EMGTKPDSLQ RVASLEDLQK RIHRDSIHSE  300
IASTFSDPEA LANG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141RRSRKRK
2135142RRSRKRKQ
3137142SRKRKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0421030.0BT042103.1 Zea mays full-length cDNA clone ZM_BFb0133G19 mRNA, complete cds.
GenBankKJ7275040.0KJ727504.1 Zea mays clone pUT5363 bZIP transcription factor (bZIP111) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805357.10.0light-inducible protein CPRF2-like
TrEMBLA0A2S3HFB10.0A0A2S3HFB1_9POAL; Uncharacterized protein
STRINGPavir.Ca02738.1.p0.0(Panicum virgatum)
STRINGPavir.Cb00258.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75952943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.27e-29bZIP family protein