PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C04667.4

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 201aa MW: 21897.1 Da PI: 4.9841

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04667.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.3	1e-15	122	175	4	57
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 k+ rr+ +NRe+ArrsR+RK+ + Le v +L++eN +L k+l ++++++ Pahal.C04667.4 122 TKKMRRMLSNRESARRSRKRKQVHMTDLESQVSKLTSENASLLKRLADMTQKYK 175 6999***********************************999966666665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.1E-17	119	183	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.277	121	173	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.9E-14	122	175	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.9E-14	123	175	No hit	No description
SuperFamily	SSF57959	6.88E-13	123	174	No hit	No description
CDD	cd14702	1.41E-18	124	174	No hit	No description
PROSITE pattern	PS00036	0	126	141	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MAGAGADDDV VEVSCGGDGR DPGAYAAVLK RRLDLYCAAV AKSMEAKSQE SSLGYPNSQA 60 SDTSQLISQA SFDDDGDGAT IVTNSNIIDH EDFRGNPANS GTSKEQSDDD GDLEENTDPA 120 NTKKMRRMLS NRESARRSRK RKQVHMTDLE SQVSKLTSEN ASLLKRLADM TQKYKDATLD 180 NRNLTVDVET MRRKVWGIVK *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	141	RRSRKRK
2	135	142	RRSRKRKQ
3	137	142	SRKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT042103	0.0	BT042103.1 Zea mays full-length cDNA clone ZM_BFb0133G19 mRNA, complete cds.
GenBank	KJ727504	0.0	KJ727504.1 Zea mays clone pUT5363 bZIP transcription factor (bZIP111) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805357.1	1e-140	light-inducible protein CPRF2-like
Swissprot	Q99090	3e-27	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A0A2S3HF93	1e-145	A0A2S3HF93_9POAL; Uncharacterized protein
STRING	Pavir.Ca02738.1.p	1e-127	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.3	3e-25	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.C04667.4

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115]