PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C04667.5

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 296aa MW: 32898.9 Da PI: 5.6014

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04667.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.4	2.1e-15	103	156	4	57
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 k+ rr+ +NRe+ArrsR+RK+ + Le v +L++eN +L k+l ++++++ Pahal.C04667.5 103 TKKMRRMLSNRESARRSRKRKQVHMTDLESQVSKLTSENASLLKRLADMTQKYK 156 6999***********************************999966666665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.1E-17	100	164	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.277	102	154	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.8E-13	103	156	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.6E-14	104	156	No hit	No description
SuperFamily	SSF57959	1.48E-12	104	155	No hit	No description
CDD	cd14702	1.57E-19	105	155	No hit	No description
PROSITE pattern	PS00036	0	107	122	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	1.5E-24	171	276	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MQLCWLQFAF WQCADMLHVW FGKHTGPSVT FEPSTTIVFY IFYCHVLLSL IPHADDGDGA 60 TIVTNSNIID HEDFRGNPAN SGTSKEQSDD DGDLEENTDP ANTKKMRRML SNRESARRSR 120 KRKQVHMTDL ESQVSKLTSE NASLLKRLAD MTQKYKDATL DNRNLTVDVE TMRRKVNIAE 180 EAVRRLTGTT LLLSTTCDKT ASSMRLTSCP SDAGSASVTT EDSMEHFLQA QLQSDLIKLD 240 LPNAAILLTS GEMGTKPDSL QRVASLEDLQ KRIHRDSIHS EIASTFSDPE ALANG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	122	RRSRKRK
2	116	123	RRSRKRKQ
3	118	123	SRKRKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805357.1	1e-164	light-inducible protein CPRF2-like
TrEMBL	A0A2S3HFK4	0.0	A0A2S3HFK4_9POAL; Uncharacterized protein
STRING	Pavir.Cb00258.1.p	1e-149	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	1e-25	basic leucine zipper 9

Link Out ? help Back to Top
Phytozome	Pahal.C04667.5