PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04667.6
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 265aa    MW: 29557.2 Da    PI: 6.3104
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04667.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.61.7e-15103156457
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                      k+ rr+ +NRe+ArrsR+RK+  +  Le  v +L++eN +L k+l  ++++++
  Pahal.C04667.6 103 TKKMRRMLSNRESARRSRKRKQVHMTDLESQVSKLTSENASLLKRLADMTQKYK 156
                     6999***********************************999966666665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.1E-17100164IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.277102154IPR004827Basic-leucine zipper domain
PfamPF001701.8E-13103156IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.27E-12104155No hitNo description
Gene3DG3DSA:1.20.5.1702.0E-13104156No hitNo description
CDDcd147021.88E-19105155No hitNo description
PROSITE patternPS000360107122IPR004827Basic-leucine zipper domain
PfamPF124981.3E-12171214IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MQLCWLQFAF WQCADMLHVW FGKHTGPSVT FEPSTTIVFY IFYCHVLLSL IPHADDGDGA  60
TIVTNSNIID HEDFRGNPAN SGTSKEQSDD DGDLEENTDP ANTKKMRRML SNRESARRSR  120
KRKQVHMTDL ESQVSKLTSE NASLLKRLAD MTQKYKDATL DNRNLTVDVE TMRRKVNIAE  180
EAVRRLTGTT LLLSTTCDKT ASSMRLTSCP SDAAILLTSG EMGTKPDSLQ RVASLEDLQK  240
RIHRDSIHSE IASTFSDPEA LANG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116122RRSRKRK
2116123RRSRKRKQ
3118123SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805357.11e-134light-inducible protein CPRF2-like
SwissprotQ7X9A83e-29RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBLA0A2T7EJ030.0A0A2T7EJ03_9POAL; Uncharacterized protein
STRINGPavir.Cb00258.1.p1e-124(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.18e-26basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Yang D,Wu L,Hwang YS,Chen L,Huang N
    Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter.
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43
    [PMID:11572990]
  3. Cheng S,Wang Z,Hong M
    Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene.
    Sci. China, C, Life Sci., 2002. 45(4): p. 352-60
    [PMID:18759022]