PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C04667.7

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 191aa MW: 21150.9 Da PI: 8.7571

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04667.7	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.7	3.2e-15	2	51	8	57
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 rr+ +NRe+ArrsR+RK+ + Le v +L++eN +L k+l ++++++ Pahal.C04667.7 2 RRMLSNRESARRSRKRKQVHMTDLESQVSKLTSENASLLKRLADMTQKYK 51 8**********************************999966666665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14702	4.31E-15	1	50	No hit	No description
PROSITE profile	PS50217	10.829	1	49	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.3E-13	2	51	IPR004827	Basic-leucine zipper domain
SMART	SM00338	6.9E-13	2	59	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.8E-14	2	51	No hit	No description
SuperFamily	SSF57959	5.2E-12	2	50	No hit	No description
PROSITE pattern	PS00036	0	2	17	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	5.1E-25	66	171	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MRRMLSNRES ARRSRKRKQV HMTDLESQVS KLTSENASLL KRLADMTQKY KDATLDNRNL 60 TVDVETMRRK VNIAEEAVRR LTGTTLLLST TCDKTASSMR LTSCPSDAGS ASVTTEDSME 120 HFLQAQLQSD LIKLDLPNAA ILLTSGEMGT KPDSLQRVAS LEDLQKRIHR DSIHSEIAST 180 FSDPEALANG *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	17	RRSRKRK
2	11	18	RRSRKRKQ
3	13	18	SRKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT042103	7e-86	BT042103.1 Zea mays full-length cDNA clone ZM_BFb0133G19 mRNA, complete cds.
GenBank	KJ727504	7e-86	KJ727504.1 Zea mays clone pUT5363 bZIP transcription factor (bZIP111) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805357.1	1e-134	light-inducible protein CPRF2-like
Swissprot	Q99090	2e-30	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A0A2S3HFB1	1e-132	A0A2S3HFB1_9POAL; Uncharacterized protein
STRING	Pavir.Cb00258.1.p	1e-112	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	4e-22	basic leucine zipper 9

Link Out ? help Back to Top
Phytozome	Pahal.C04667.7

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115]