PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04713.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 317aa    MW: 34291.2 Da    PI: 8.8435
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04713.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.54.4e-52131411128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhP+d+el+++yL++k+ gk  ++  +  + +vd++kvePwdLp++++ + +ewyfFs +d+kyatg+r+nrat sgyWkatgkd++v 
  Pahal.C04713.1  13 LPPGFRFHPRDDELICDYLAPKLGGKVgFSGRRPpMVDVDLNKVEPWDLPEAAAVGPREWYFFSLKDRKYATGQRTNRATVSGYWKATGKDRAVA 107
                     79***********************9986665656***************88888999************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + +g+lvg++ktLvfy+grapkg+kt+Wvmheyr+
  Pahal.C04713.1 108 R-RGALVGMRKTLVFYQGRAPKGRKTEWVMHEYRM 141
                     9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-582166IPR003441NAC domain
PROSITE profilePS5100555.17413166IPR003441NAC domain
PfamPF023658.9E-2714141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSMSFLSMVE AELPPGFRFH PRDDELICDY LAPKLGGKVG FSGRRPPMVD VDLNKVEPWD  60
LPEAAAVGPR EWYFFSLKDR KYATGQRTNR ATVSGYWKAT GKDRAVARRG ALVGMRKTLV  120
FYQGRAPKGR KTEWVMHEYR MEGALEQSSK FSSKDEDWVL CRVICKKKLP GGGASSKASR  180
SLATNGGHDT TPTSSLPLPP LMDTTLAQLQ AAMNTTAGSG AVEQVPCFSS FNNIASNSNT  240
AAAAAAQPCY LPMVTGSHGM SFLDHGLPEL GGCFDPLNCD KKLLKAVLSQ FGGEVVPSLT  300
HEMAAGTATS TWMNHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-5011671169Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805880.10.0NAC domain-containing protein 21/22-like
TrEMBLA0A2S3HFC20.0A0A2S3HFC2_9POAL; Uncharacterized protein
STRINGSi022747m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100223144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.13e-75NAC family protein