PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C04742.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 246aa MW: 27667.6 Da PI: 8.9721

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04742.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.2	1.9e-08	75	136	1	45
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwq 45 r+ WT E+e+lv+a + ++ W Ia+t++ +Rt+kq+k++w+ Pahal.C04742.1 75 RLDWTIAEEEKLVHAWVYHSNDsitgnnqtglsFWGQIAETFNstaepsRRRTAKQLKDHWN 136 789**********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.272	70	136	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.9E-5	71	138	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.77E-5	74	147	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MTGWSPDFHT FTDLLHYSPL LHLRLRRHST VISLSAQGAG LKVRTPHAAR TVPSSVSVES 60 QNEGAGATEP KRPKRLDWTI AEEEKLVHAW VYHSNDSITG NNQTGLSFWG QIAETFNSTA 120 EPSRRRTAKQ LKDHWNVCNR EVALFNGYYI QEERVRQSGA DDAMVMEGAM TRYENDPKVT 180 TAFKHHHWWR AVRHEPKWAA KHGPGSGSDV SSKRTRLGVS GEYSSDGTED TKQDNETHPI 240 GRDRP*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825237.1	1e-83	uncharacterized protein LOC112900608
TrEMBL	A0A2T7EH45	1e-135	A0A2T7EH45_9POAL; Uncharacterized protein
STRING	GRMZM2G328814_P01	3e-84	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3263	3	37

Link Out ? help Back to Top
Phytozome	Pahal.C04742.1