PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C04803.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

YABBY

Protein Properties

Length: 199aa MW: 22107.1 Da PI: 8.9982

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04803.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	239.8	5.8e-74	4	170	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 ++ ++++vCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsvnl+ ++ l+ +++ + + +e+ k ++ n + + ++s++ Pahal.C04803.1 4 QIAPAADHVCYVHCNFCNTVLAVSVPGNSMLNIVTVRCGHCTNLLSVNLRALMHSLPEQQD--QLQLFDSQENIKAHGINGSHLEFGSSSSKFRL 96 567899************************************************99886..44445567888888888877777777777777 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ ++ne++ ++++ rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl Pahal.C04803.1 97 PMMYSPQNEHHLLQEQTLNARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 170 76554555555555555589**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.3E-73	9	170	IPR006780	YABBY protein
SuperFamily	SSF47095	3.67E-8	116	164	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.2E-5	117	164	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MSAQIAPAAD HVCYVHCNFC NTVLAVSVPG NSMLNIVTVR CGHCTNLLSV NLRALMHSLP 60 EQQDQLQLFD SQENIKAHGI NGSHLEFGSS SSKFRLPMMY SPQNEHHLLQ EQTLNARPPE 120 KRQRVPSAYN RFIKEEIRRI KANNPDISHR EAFSTAAKNW AHYPNIHFGL SPGREGGKKL 180 VDEAVSASPA PKKIQGLY*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035812	2e-67	BT035812.1 Zea mays full-length cDNA clone ZM_BFb0084F06 mRNA, complete cds.
GenBank	BT041668	2e-67	BT041668.1 Zea mays full-length cDNA clone ZM_BFb0028G13 mRNA, complete cds.
GenBank	BT068409	2e-67	BT068409.1 Zea mays full-length cDNA clone ZM_BFb0157I12 mRNA, complete cds.
GenBank	KJ726849	2e-67	KJ726849.1 Zea mays clone pUT3389 C2C2-YABBY transcription factor (YAB5) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804907.1	1e-148	protein YABBY 6-like isoform X1
Swissprot	Q2QM17	4e-92	YAB6_ORYSJ; Protein YABBY 6
TrEMBL	A0A2S3HFJ4	1e-147	A0A2S3HFJ4_9POAL; Uncharacterized protein
STRING	Si023308m	1e-136	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1394	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-60	YABBY family protein

Link Out ? help Back to Top
Phytozome	Pahal.C04803.1