PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C04880.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 170aa MW: 17915.5 Da PI: 12.1551

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04880.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.3	1.2e-11	60	107	3	50
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 + +r rrk++NRe+ArrsR+RK+ +eeL+ +++ L a N++L+ +l Pahal.C04880.1 60 AERRLRRKISNRESARRSRARKQRHLEELRARAARLRAGNRELAARLR 107 56899**************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.7E-9	58	122	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.2E-8	59	107	No hit	No description
Pfam	PF00170	3.4E-8	60	108	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.071	60	123	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.5E-8	62	110	No hit	No description
PROSITE pattern	PS00036	0	65	80	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MAPQLPPLSD PALEAFLADI GFGLGPDPTP LDLTTTTTMA ATPPEEETSA SASAAAAGEA 60 ERRLRRKISN RESARRSRAR KQRHLEELRA RAARLRAGNR ELAARLRGVQ GRAALVRLTN 120 ARLRAEAGAL GRRLAAARRA IALRQMYAAA SAAGTSGGFE LQALASLIV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	81	RRSRARKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808024.1	1e-109	ocs element-binding factor 1-like
TrEMBL	A0A2T8KM60	1e-108	A0A2T8KM60_9POAL; Uncharacterized protein
STRING	Si024325m	2e-62	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15125	19	19

Link Out ? help Back to Top
Phytozome	Pahal.C04880.1