PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04892.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 650aa    MW: 72139.3 Da    PI: 5.9988
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04892.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.8e-094084451954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  Pahal.C04892.1 408 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 445
                     665559******************************88 PP
2BELL119.61.5e-38271342172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e+qelq+k akL+ +l+eVd++Yk+y++q+q v+ssF++vag g+akpYt++Al++iSrhFrcLkdai +qi
  Pahal.C04892.1 271 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQSVVSSFDVVAGPGAAKPYTAVALQTISRHFRCLKDAINDQI 342
                     689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.4E-56195340IPR006563POX domain
PfamPF075263.1E-51201338IPR006563POX domain
PROSITE profilePS5007112.325386449IPR001356Homeobox domain
CDDcd000864.17E-12389450No hitNo description
SMARTSM003893.6E-9389453IPR001356Homeobox domain
SuperFamilySSF466892.82E-17390455IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-28392455IPR009057Homeodomain-like
PfamPF059201.0E-17406445IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MMATYYSSPG SERDSQNMYS RDPGNASYPM PSALGNLLYL NNSTSGPYTE FSGILQSQQN  60
CMEMPDPGHP SVMSHDSSAR ESDMLGSHQG QRSFGPVKDM KNEMLMHMLD GSQSSTADLI  120
HDDAHNGAQL DFGVLNNHSS SNIPSVQGQG LSLSLNTQIL APSLPYWSVK PDMLSPHSYH  180
DSLRVDDIRM KSMQSEASRA IRNSRYLKAA QELLDEVVNV WKNIKQKAQK EQVEAGKTDG  240
KDTEGGLKSE GVSSNAQESA ANAAPELSTA EKQELQNKMA KLMAMLDEVD RKYKHYYHQM  300
QSVVSSFDVV AGPGAAKPYT AVALQTISRH FRCLKDAIND QINVIRKKLG EEENSSGKEG  360
KLTRLRYIDQ QLRQQRAFQQ YGMIPQNAWR PQRGLPENSV TILRAWLFEH FLHPYPKDSE  420
KLMLARQTGL TRSQISNWFI NARVRLWKPM IEDMYKEEIG DIEQDSNSSS DNVSRSKGKM  480
ASSEDKEDLK SSTPRVCESS QLSESRASIG TMNVGVAPVG FQNESNPDDS FMNLMLKDQR  540
SNEADGGLLL HNAVAHHQDE NARFMAYHLA ELGRYGNGNV SLTLGLQHSS SSLSVPNAQQ  600
SFAGVGDDDI YNATAPLGVS VASSDYESMN QMDQRQRFEQ SPLLHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-16395452158Homeobox protein Meis1
4xrs_B3e-16395452158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805870.10.0BEL1-like homeodomain protein 7
TrEMBLA0A2S3HFU80.0A0A2S3HFU8_9POAL; Uncharacterized protein
STRINGSi021437m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-106BEL1-like homeodomain 7