PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04926.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 273aa    MW: 29774.4 Da    PI: 9.7724
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04926.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.6e-14361171399
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +++ ++p kf+    g + + +  +l+d++grsW+v l  ++  +  + ++GW +Fv+ang+ +g  +vF++ g  +f   v +f++
  Pahal.C04926.1  36 NRMQSIPPKFT---AGRPWRATAGKLRDPTGRSWDVDLHRDGDHRVSFTGRGWLGFVSANGISAGQLLVFEHRGGLDF--AVDLFDA 117
                     45569999999...55677778899*************666666668888*********************7665555..8988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.54E-1312116No hitNo description
Gene3DG3DSA:2.40.330.102.3E-1512120IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-1414120IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.8E-914118IPR003340B3 DNA binding domain
PROSITE profilePS5086311.94224118IPR003340B3 DNA binding domain
PfamPF023629.4E-1236117IPR003340B3 DNA binding domain
SMARTSM010191183272IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-9185270IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-6189254IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.473192272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MATNRAGGGG RHKFFKVLLP GFFELSLIIH EINPTNRMQS IPPKFTAGRP WRATAGKLRD  60
PTGRSWDVDL HRDGDHRVSF TGRGWLGFVS ANGISAGQLL VFEHRGGLDF AVDLFDASGC  120
LSGDGSRDED DDEQRMAETT GDKESGNCRR RPEATGVKRR RKRSPGSTAT TGSGDDGTLC  180
RRIERPYQLR FLDLSKSFCD RVGWTSSRDV ELVAGGDEQR RRWPVSVKVS AKSGMMGAGW  240
TEFAQGNGVG LSDGAFVPLE CGALHVRVIK MT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148162RRRPEATGVKRRRKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432281e-97AC243228.1 Panicum virgatum clone PV_ABa011-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807013.11e-168putative B3 domain-containing protein Os04g0346900
TrEMBLA0A2S3HG640.0A0A2S3HG64_9POAL; Uncharacterized protein
STRINGPavir.J34527.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP168021012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-09VERDANDI