PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00049.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 1128aa    MW: 125351 Da    PI: 6.7015
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00049.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.3e-23116217199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++
  Pahal.D00049.2 116 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDSTWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RDE 206
                     99*****************************954.4444.48************************************************..568 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     +++l+++++r+
  Pahal.D00049.2 207 KQQLLLGIRRA 217
                     8889****997 PP
2Auxin_resp118.36.2e-39242325183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras++eFvv+++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Pahal.D00049.2 242 AAHAAANNSPFTIFYNPRASPTEFVVPFAKYQKALYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 325
                     79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.66E-43105245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-41108231IPR015300DNA-binding pseudobarrel domain
CDDcd100173.63E-19115207No hitNo description
PROSITE profilePS5086312.026116218IPR003340B3 DNA binding domain
PfamPF023627.7E-21116217IPR003340B3 DNA binding domain
SMARTSM010191.2E-22116218IPR003340B3 DNA binding domain
PfamPF065071.1E-33242325IPR010525Auxin response factor
PfamPF023093.9E-109911079IPR033389AUX/IAA domain
PROSITE profilePS5174527.9759941078IPR000270PB1 domain
SuperFamilySSF542771.57E-710091073No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1128 aa     Download sequence    Send to blast
MGEKKPPAIN SELWHACAGP LVSLPPAGSL VVYFPQGHSE QVAASMQKDV DGHVPSYPNL  60
PSKLICLLHN VTLHADPETD EVYAQMTLQP VTSYGKEALQ LSELALKQPR PQTEFFCKTL  120
TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIQARD LHDSTWTFRH IYRGQPKRHL  180
LTTGWSLFVS GKRLFAGDSV IFVRDEKQQL LLGIRRANRQ PTNISSSVLS SDSMHIGILA  240
AAAHAAANNS PFTIFYNPRA SPTEFVVPFA KYQKALYGNQ ISLGMRFRMM FETEELGTRR  300
YMGTITGISD LDPVRWKNSQ WRNLQVGWDE SAAGERRNRV SIWEIEPVAA PFFICPPPFF  360
GSKRPRQLDD ESSEMENLLK RAMPWLGEEI CIKDPQTQNT IMPGLSLVQW MNMNMQQNSS  420
FANTAMQSEY LRSLSNPSMQ NLGAADLSRQ LCLQNQILQQ NSIQFSSPKL TQQMQPVHEL  480
SKATLPLNQL GVSTKPQEQT QDPSNLQRQQ QSMNQLLPLS QSQTNLVQAQ VIVQNQVQQQ  540
QPQSMTQNQQ ASTSQPQLLH HQQQQQQQQQ QQHQQQKLLH QQQQLLLQQQ QLQQQQQNQQ  600
QLNKMVAQVP NLAAQQLQLS DQQLQLQLLQ KLQQQQQSLL SQPAVTLAQL PLIQEQQKLI  660
LDMQQQLSNS QSLSQQQTMP QQSTKVPSQT PPPPPPPPHM QQEPQQKLPQ KHVGFPDTSH  720
AAIPPATSVN AISVSGSPLI ANGATHSVLT EEIPSCSTSP SSANGNHLVQ PILGRNQQCG  780
MINNEKVPQS TAPMSIPSSL DAVTAAPRST KELPKLNSNV KQSVMASKLP NPGPVPQNLV  840
NSAPPTDYLE TASSATSVWL SQTDGLLHQG FPMSNFNQQH MFKDAPPETD IQGADPCNNA  900
LFGINSDGQL GFPMGADGFL SNGIDTSKYQ NHISTDIDGN YRIPKDGQQE ISSSMVSQSF  960
GASDMAFNSF DSAMNDGGFL NKTSWLPAPP LKRRTFTKVY KRGAVGRSID ISQYSGYDEL  1020
KHALARMFSI EGQLEERQRI GWKLVYKDHE DDILLLGDDP WEEFVNCVRC IRILSPQEVQ  1080
QMSLDGDLGN NILPNQACSS SDGGNAWRAR CDQNSGNPSN GSYDQFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-168234645388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810781.10.0auxin response factor 19-like isoform X1
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A2S3HGJ60.0A0A2S3HGJ6_9POAL; Auxin response factor
STRINGPavir.J00164.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]