PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00049.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 1083aa    MW: 120697 Da    PI: 6.7185
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00049.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.36e-2371172199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++
  Pahal.D00049.3  71 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDSTWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RDE 161
                     99*****************************954.4444.48************************************************..568 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     +++l+++++r+
  Pahal.D00049.3 162 KQQLLLGIRRA 172
                     8889****997 PP
2Auxin_resp118.45.9e-39197280183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras++eFvv+++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Pahal.D00049.3 197 AAHAAANNSPFTIFYNPRASPTEFVVPFAKYQKALYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 280
                     79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-4360200IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-4163186IPR015300DNA-binding pseudobarrel domain
CDDcd100173.41E-1970162No hitNo description
SMARTSM010191.2E-2271173IPR003340B3 DNA binding domain
PROSITE profilePS5086312.02671173IPR003340B3 DNA binding domain
PfamPF023627.3E-2171172IPR003340B3 DNA binding domain
PfamPF065071.0E-33197280IPR010525Auxin response factor
PfamPF023093.7E-109461034IPR033389AUX/IAA domain
PROSITE profilePS5174527.9759491033IPR000270PB1 domain
SuperFamilySSF542771.57E-79641028No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1083 aa     Download sequence    Send to blast
MQKDVDGHVP SYPNLPSKLI CLLHNVTLHA DPETDEVYAQ MTLQPVTSYG KEALQLSELA  60
LKQPRPQTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE IQARDLHDST  120
WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD EKQQLLLGIR RANRQPTNIS  180
SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VVPFAKYQKA LYGNQISLGM  240
RFRMMFETEE LGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI  300
EPVAAPFFIC PPPFFGSKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP QTQNTIMPGL  360
SLVQWMNMNM QQNSSFANTA MQSEYLRSLS NPSMQNLGAA DLSRQLCLQN QILQQNSIQF  420
SSPKLTQQMQ PVHELSKATL PLNQLGVSTK PQEQTQDPSN LQRQQQSMNQ LLPLSQSQTN  480
LVQAQVIVQN QVQQQQPQSM TQNQQASTSQ PQLLHHQQQQ QQQQQQQHQQ QKLLHQQQQL  540
LLQQQQLQQQ QQNQQQLNKM VAQVPNLAAQ QLQLSDQQLQ LQLLQKLQQQ QQSLLSQPAV  600
TLAQLPLIQE QQKLILDMQQ QLSNSQSLSQ QQTMPQQSTK VPSQTPPPPP PPPHMQQEPQ  660
QKLPQKHVGF PDTSHAAIPP ATSVNAISVS GSPLIANGAT HSVLTEEIPS CSTSPSSANG  720
NHLVQPILGR NQQCGMINNE KVPQSTAPMS IPSSLDAVTA APRSTKELPK LNSNVKQSVM  780
ASKLPNPGPV PQNLVNSAPP TDYLETASSA TSVWLSQTDG LLHQGFPMSN FNQQHMFKDA  840
PPETDIQGAD PCNNALFGIN SDGQLGFPMG ADGFLSNGID TSKYQNHIST DIDGNYRIPK  900
DGQQEISSSM VSQSFGASDM AFNSFDSAMN DGGFLNKTSW LPAPPLKRRT FTKVYKRGAV  960
GRSIDISQYS GYDELKHALA RMFSIEGQLE ERQRIGWKLV YKDHEDDILL LGDDPWEEFV  1020
NCVRCIRILS PQEVQQMSLD GDLGNNILPN QACSSSDGGN AWRARCDQNS GNPSNGSYDQ  1080
FE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-143930196388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810781.10.0auxin response factor 19-like isoform X1
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A2S3HGJ60.0A0A2S3HGJ6_9POAL; Auxin response factor
STRINGPavir.Db00232.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-179auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]