PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00115.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SRS
Protein Properties Length: 323aa    MW: 32453 Da    PI: 9.1876
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00115.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702215.31.4e-66942544154
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrel..kskkqsalss 88 
                      ++sCqdCGn+akkdCah+RCRtCC+srgf+C thvkstWvpaakrrerqqqlaa+ + aa+++        a+aaskr+rel  +  +  +++s
  Pahal.D00115.1  94 AGTSCQDCGNNAKKDCAHMRCRTCCRSRGFSCPTHVKSTWVPAAKRRERQQQLAALFRGAANNNsasaaaaaAAAASKRPRELvrSLGRLPSANS 188
                     4579****************************************************999988887888888777888888888552333344444 PP

          DUF702  89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     + +++++s+   +  ++P+e+s+eavfrcvr++ vd+ ++elaYqtavsigGh+fkGiL+d+G+++
  Pahal.D00115.1 189 AMVTTTTSSGDGSGGRFPPELSVEAVFRCVRIGPVDEPDAELAYQTAVSIGGHTFKGILRDHGPAD 254
                     4444444555556677***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.2E-6395253IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.1E-2597139IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.5E-18204252IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAGFSLRGSG GGGGRGGDRA GDHPIGADSL FLYARGAAAA AADTAASGGG GGGIGFQLWH  60
PHQQAAAAAA PHTSQFFSSG VATGVVLGRG GGRAGTSCQD CGNNAKKDCA HMRCRTCCRS  120
RGFSCPTHVK STWVPAAKRR ERQQQLAALF RGAANNNSAS AAAAAAAAAS KRPRELVRSL  180
GRLPSANSAM VTTTTSSGDG SGGRFPPELS VEAVFRCVRI GPVDEPDAEL AYQTAVSIGG  240
HTFKGILRDH GPADDAAVGQ LPPSSAEYHQ LTGHAREGSS PAGSSEAAAT VATSAAVLMD  300
PYPTPIGAFA AGTQFFPHNP RT*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6783471e-121AB678347.1 Hordeum vulgare subsp. vulgare Lks2 gene for putative short internodesfamily transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813341.11e-161protein SHI RELATED SEQUENCE 1
TrEMBLA0A2T7DU751e-166A0A2T7DU75_9POAL; Uncharacterized protein
STRINGPavir.J38504.1.p1e-165(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-53Lateral root primordium (LRP) protein-related