PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00176.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 161aa    MW: 17579.9 Da    PI: 8.7291
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00176.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_155.21.5e-1788144359
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                     +++r +r+++NRe+A rsR+RK+a++e+Le++v  L  eN +Lkk+ +elk eva+l
  Pahal.D00176.1  88 DDRRSIRMMRNRESALRSRARKRAYVENLEKEVRRLVDENLKLKKQCKELKLEVAAL 144
                     5799************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-1486150IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.8E-1687144No hitNo description
PROSITE profilePS5021711.5388144IPR004827Basic-leucine zipper domain
PfamPF001701.1E-1489144IPR004827Basic-leucine zipper domain
CDDcd147071.46E-1890144No hitNo description
SuperFamilySSF579591.81E-1290144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MAANYHHYQM AVHAAAAAAA AWREPDSPQL SFMSGCSSLF SISTLQDDDD GAVVIAGHAL  60
PSTPVSLAGF AGDEVDMEVQ QISGGSGDDR RSIRMMRNRE SALRSRARKR AYVENLEKEV  120
RRLVDENLKL KKQCKELKLE VAALVLPTKS SLRRTSSTQF *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0338581e-148BT033858.1 Zea mays full-length cDNA clone ZM_BFc0165B20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812603.11e-116bZIP transcription factor 46-like
TrEMBLA0A2S3HG731e-114A0A2S3HG73_9POAL; Uncharacterized protein
TrEMBLA0A2T7DU081e-114A0A2T7DU08_9POAL; Uncharacterized protein
TrEMBLA0A3L6PES21e-114A0A3L6PES2_PANMI; Protein FD-like
STRINGSi007412m1e-103(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40173072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35900.13e-10bZIP family protein