PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00284.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 240aa    MW: 25710.8 Da    PI: 8.611
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00284.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.001386108123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+k+F++   L  H  +H
  Pahal.D00284.1  86 YECKTCNKCFPSFQALGGHRTSH 108
                     99**********99998888777 PP
2zf-C2H2110.0014145167123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cg +F +   L  H+r+H
  Pahal.D00284.1 145 HECSACGATFASGQALGGHMRRH 167
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.1186108IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-986108IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.42786113IPR007087Zinc finger, C2H2
SuperFamilySSF576675.1E-886108No hitNo description
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
SuperFamilySSF576675.1E-8140167No hitNo description
PfamPF139121.0E-11144168IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889145167IPR007087Zinc finger, C2H2
SMARTSM003550.041145167IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280147167IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MKHRTNKRRR HCSSLPSLAS SSSSRSGSTT TQQEEEDEEA DMAKCLILLA QGPAVVVEPH  60
PPIIMPAPET PRSTSRRCAG VSSSSYECKT CNKCFPSFQA LGGHRTSHNN DKKQQPRRPE  120
QEATAAAVTT TLSLRTAAPG RPAAHECSAC GATFASGQAL GGHMRRHRPL TMSAAVPPES  180
VVTADDSSNS NGRLLLLLQE RSAGGNHHVN LELDLNLLPA PSTEQEVTSP AKRMHHHFN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811584.11e-174zinc finger protein ZAT11-like
TrEMBLA0A3L6RWY21e-140A0A3L6RWY2_PANMI; Uncharacterized protein
STRINGPavir.J04850.1.p1e-135(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-28C2H2 family protein