PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00398.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 333aa    MW: 35249.4 Da    PI: 11.8172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00398.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-18153202255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +gr++AeIrdp    k++ ++lg+f++ae Aa+a++aa+++l+g
  Pahal.D00398.1 153 RYRGVRRRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAARSLRG 202
                     59*******.7*********83...36*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-11153202IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-21153210IPR016177DNA-binding domain
PROSITE profilePS5103222.168153210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-29153211IPR001471AP2/ERF domain
CDDcd000183.02E-14153210No hitNo description
SMARTSM003803.1E-33153216IPR001471AP2/ERF domain
PRINTSPR003671.9E-7154165IPR001471AP2/ERF domain
PRINTSPR003671.9E-7176192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MRMLIRRKAR TGALENNNSQ PAGARGGAAS PESTGARPGA TPKRARGAGR SATRRGRVVE  60
WWWWRRTRAR GRRNRSERAQ KRPKKPRRPG AGGAQREEPR AGVGKKINYW PNPSRAPGPL  120
TASPPPTCPP PSPSAMRRAK PPQPQPSPSP EIRYRGVRRR PSGRYAAEIR DPAKKTPIWL  180
GTFDSAEAAA RAYDAAARSL RGPTARTNFP SAAAPAPRHS RPPAASAAAQ AAAAAAAATS  240
SHSSTVESWS DGATRAAAAA LARSAAPTEE KDEEDCRSYC GSSSSVLCED AGGDDAAASR  300
APLPFDLNLP PPHDAATEAD QMGARYDTLL RL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-171532111473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9538330.0EU953833.1 Zea mays clone 1447216 ethylene-responsive transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810343.11e-131ethylene-responsive transcription factor 3-like
TrEMBLA0A2T7DUU81e-85A0A2T7DUU8_9POAL; Uncharacterized protein
STRINGGRMZM2G175543_P015e-74(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.14e-09ethylene response factor 7