PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00463.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 231aa    MW: 25058 Da    PI: 9.2853
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00463.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45e-1895149256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq + Le+ F+ ++ +s++++ eLA++++L+ rqV vWFqNrRa+ k
  Pahal.D00463.1  95 RKKLRLTKEQSTLLEDTFRAHNILSHAQKHELARQVNLSARQVEVWFQNRRARTK 149
                     788899***********************************************98 PP
2HD-ZIP_I/II1154.5e-3795183189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+rl+keq++lLE++F++++ L++ +K+elar+++l++rqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+ en+rL++e ++L++
  Pahal.D00463.1  95 RKKLRLTKEQSTLLEDTFRAHNILSHAQKHELARQVNLSARQVEVWFQNRRARTKLKQTEVDCEILKRCCESLTGENQRLKHELAQLQR 183
                     69*************************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-1978150IPR009057Homeodomain-like
SuperFamilySSF466893.3E-1978152IPR009057Homeodomain-like
PROSITE profilePS5007117.4191151IPR001356Homeobox domain
SMARTSM003898.6E-1493155IPR001356Homeobox domain
PfamPF000461.9E-1595149IPR001356Homeobox domain
CDDcd000866.91E-1495152No hitNo description
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
PfamPF021831.4E-9151182IPR003106Leucine zipper, homeobox-associated
SMARTSM003408.5E-15151195IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MYSASAMEAE DFGKSWLGLG IGGGDLKRSH GERRSSSAVR LDLLFPQSVK EEAAVGAKAE  60
NGARKRLKIT DDDDARLSHE PSPSDDGGDG SAGTRKKLRL TKEQSTLLED TFRAHNILSH  120
AQKHELARQV NLSARQVEVW FQNRRARTKL KQTEVDCEIL KRCCESLTGE NQRLKHELAQ  180
LQRSAAAAAG LYVQLPRRAA ATATVCPSCE KVTVTTSGGE TSKSSSSYSS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19399TRKKLRL
2143151RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9554319e-52EU955431.1 Zea mays clone 1531862 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813457.11e-169homeobox-leucine zipper protein HOX18-like
SwissprotQ5Z6F62e-63HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLA0A2S3HGQ71e-167A0A2S3HGQ7_9POAL; Uncharacterized protein
STRINGSi007238m1e-128(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-44homeobox from Arabidopsis thaliana