PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D00594.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 344aa MW: 37209.1 Da PI: 8.7853

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D00594.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.7	1.3e-33	37	91	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Pahal.D00594.1 37 KPRLRWTAELHDRFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 91 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.8E-32	34	92	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.457	34	94	IPR017930	Myb domain
SuperFamily	SSF46689	7.35E-17	36	93	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-24	37	92	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-8	39	89	IPR001005	SANT/Myb domain
Pfam	PF14379	4.0E-21	131	174	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MFPSSKKQPS TGAASSNDRP MCVQGDSGGL VLTTDPKPRL RWTAELHDRF VDAVAQLGGP 60 DKATPKTIMR VMGVKGLTLY HLKSHLQKFR LGKQHKEFGD HTAMEMQRNV ASSSSVMGRT 120 MNDRSGVNVN SEALRIKMEV QRRLHGELEV QKHLQMRVEA QGKYMQSIVE KAYQALGSSD 180 CATWPTGYRS LGNQAVLDIG GGSTSFSSLQ DLHFYGGSSH MDQLLQQMER PMDSFLTLGE 240 SFIGSSADKK GPSHCSSMAS GKSSMMWAGE EPQQAKSGAD QLQMGSSTTM EGGIDVMDPI 300 AGLYEGAMSG DSMSKGFEGS SSKLEMKSPP HQHAPVGSQR VRI*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MFPSSKKQPS TGAASSNDRP MCVQGDSGGL VLTTDPKPRL RWTAELHDRF VDAVAQLGGP  60
DKATPKTIMR VMGVKGLTLY HLKSHLQKFR LGKQHKEFGD HTAMEMQRNV ASSSSVMGRT  120
MNDRSGVNVN SEALRIKMEV QRRLHGELEV QKHLQMRVEA QGKYMQSIVE KAYQALGSSD  180
CATWPTGYRS LGNQAVLDIG GGSTSFSSLQ DLHFYGGSSH MDQLLQQMER PMDSFLTLGE  240
SFIGSSADKK GPSHCSSMAS GKSSMMWAGE EPQQAKSGAD QLQMGSSTTM EGGIDVMDPI  300
AGLYEGAMSG DSMSKGFEGS SSKLEMKSPP HQHAPVGSQR VRI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-18	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-18	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-18	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-18	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728054	0.0	KJ728054.1 Zea mays clone pUT6200 G2-like transcription factor (GLK34) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810576.1	0.0	myb family transcription factor APL-like
Swissprot	Q9SAK5	4e-81	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A2S3HH91	0.0	A0A2S3HH91_9POAL; Uncharacterized protein
STRING	Si006865m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2504	38	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	2e-83	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.D00594.1

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]