PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00652.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 261aa    MW: 27544.3 Da    PI: 8.6409
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00652.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.62e-152576155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Pahal.D00652.2 25 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 76
                    57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-102576IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-182586IPR016177DNA-binding domain
CDDcd000188.69E-242586No hitNo description
PROSITE profilePS5103219.0452684IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-182685IPR001471AP2/ERF domain
SMARTSM003801.5E-332690IPR001471AP2/ERF domain
PRINTSPR003676.4E-52738IPR001471AP2/ERF domain
PRINTSPR003676.4E-56686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MKSMTRQEFI ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ  60
EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV ESILNSDLPV GGGAAGRASK FPLDSLPPAS  120
AAAMITGAAS HAMPPSEKDY WSLLALHYQQ QQQQQFPASA YEAYGSGGVN VDFTMGTSSH  180
SGSNASSGVM WGAATGAMGQ QDSSSSKQGN SGYGSNIPYA AAAMVSGSAG YEGSTGNNGT  240
WVTSNTSTAP QYYNYLFGME *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0400030.0BT040003.1 Zea mays full-length cDNA clone ZM_BFc0057O19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812430.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2S3HHM70.0A0A2S3HHM7_9POAL; Uncharacterized protein
STRINGPavir.Db00529.1.p1e-165(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.14e-57AINTEGUMENTA-like 5