PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D00679.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 227aa MW: 25054.6 Da PI: 6.2994

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D00679.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.7	5.4e-08	151	214	1	47
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 r+ WT E+e+lv++ + ++ W Ia+t+ +Rt+kq+k++w+ y Pahal.D00679.1 151 RLDWTIAEEEKLVHVWVYHSNDsitnnnqtglsFWGQIAETFKsttepsRRRTAKQLKDHWNVY 214 789***********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR01217	1.2E-11	46	58	No hit	No description
PRINTS	PR01217	1.2E-11	68	89	No hit	No description
PRINTS	PR01217	1.2E-11	91	107	No hit	No description
PRINTS	PR01217	1.2E-11	109	126	No hit	No description
PROSITE profile	PS50090	6.458	150	215	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	7.6E-5	150	214	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MTGWSPDFYI FTDLLQSDGS QASPQDESSP MHRHSDVNSS PQPRALFPPA ASPAPGAPPP 60 PYHYPYGPYS YPPPPYAPPP GTRSGDEGPY PPPSYTPPRY APPPYAPAPY APPPYGPYPP 120 PPHAAPTVSS PVSIESQNEG AGATEPKCPK RLDWTIAEEE KLVHVWVYHS NDSITNNNQT 180 GLSFWGQIAE TFKSTTEPSR RRTAKQLKDH WNVYNHEVTL FNRYYI*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008644673.1	4e-48	uncharacterized protein LOC103626074
TrEMBL	A0A2T7E0S8	1e-82	A0A2T7E0S8_9POAL; Uncharacterized protein
STRING	GRMZM2G088005_P01	1e-47	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3263	3	37

Link Out ? help Back to Top
Phytozome	Pahal.D00679.1