PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D00726.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 274aa MW: 27935.2 Da PI: 10.3136

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D00726.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.3	3.3e-08	179	221	21	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R RKk+++ e ++ v +L+ eN+aL++e++ l+ + +l +e+ Pahal.D00726.1 179 RPRKKMRLPEIQQLVRSLSVENDALREEMKALQRACTALSKEN 221 89*************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.2E-5	179	218	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MTAVDAEPYA VVATAADIIC SLRGADLAGW TPPWRKGAGA PDLPSACDGA GQEEQEGGGH 60 ARGLAWPAVA RGKRSRSRRA GSPSASGSAS ASAGAAAASS KGEGRKKPRR GARGSPASPL 120 DYSGSGASTS GGEDGAFCSQ PAAPAAPTAA AAPPSSKVGG LAGRRSILPV PPPRPAGQRP 180 RKKMRLPEIQ QLVRSLSVEN DALREEMKAL QRACTALSKE NGKLETRLDH SSKQNGMISA 240 ENKGKPQHDH EHAAKQDARN GIVLPDLNLP ADD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	77	KRSRSR
2	178	184	RPRKKMR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811831.1	0.0	collagen alpha-1(I) chain-like
TrEMBL	A0A2S3HHK3	0.0	A0A2S3HHK3_9POAL; Uncharacterized protein
STRING	GRMZM2G050912_P01	1e-89	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3790	29	51

Link Out ? help Back to Top
Phytozome	Pahal.D00726.1