PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00727.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 320aa    MW: 34626.8 Da    PI: 6.0072
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00727.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-072562892154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  Pahal.D00727.1 256 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 289
                     569*****************************87 PP
2ELK30.77.1e-11210231122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++L+++++E++
  Pahal.D00727.1 210 ELKHELKQGYREKLVDIREEIM 231
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-194488IPR005540KNOX1
PfamPF037901.5E-164784IPR005540KNOX1
SMARTSM012561.5E-2599154IPR005541KNOX2
PfamPF037911.0E-16107153IPR005541KNOX2
PROSITE profilePS5121310.196210230IPR005539ELK domain
SMARTSM011883.8E-4210231IPR005539ELK domain
PfamPF037891.0E-6210231IPR005539ELK domain
PROSITE profilePS5007111.758230293IPR001356Homeobox domain
SMARTSM003893.3E-10232297IPR001356Homeobox domain
SuperFamilySSF466899.41E-16232297IPR009057Homeodomain-like
CDDcd000863.98E-11233294No hitNo description
Gene3DG3DSA:1.10.10.602.4E-24237294IPR009057Homeodomain-like
PfamPF059203.4E-18250289IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAFHYPDHAL AMDPAAAAGV GAAVNPSFVS PGGGGVGGGA GGWEREKAAI AAHPLYERLL  60
EAHVACLRVA TPVDQLPRID AQIAARPPPM AAAAAAAAAG GAQSGGEELD LFMTHYVLLL  120
CSFKEQLQQH VRVHAMEAVM ACWELEQTLQ SLTGASPGEG TGATMSDDED NQVDSESNMF  180
DGNEGSDGMG FGPLMLTEGE RSLVERVRQE LKHELKQGYR EKLVDIREEI MRKRRAGKLP  240
GDTASTLKAW WQAHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSNPASSSS  300
DKSKRKRSTA GDGNAEQSW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286306RKRNWHSNPASSSSDKSKRKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0998780.0FP099878.1 Phyllostachys edulis cDNA clone: bphylf032a14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811840.10.0homeobox protein knotted-1-like 11 isoform X1
SwissprotQ0E3C30.0KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A2S3HHU90.0A0A2S3HHU9_9POAL; Uncharacterized protein
TrEMBLA0A2T7DW160.0A0A2T7DW16_9POAL; Uncharacterized protein
STRINGPavir.J37473.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-143KNOTTED1-like homeobox gene 3