PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00792.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 138aa    MW: 14520.8 Da    PI: 6.0011
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00792.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.39.1e-14247151
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                    +gy+GVr+ +  g+W AeIrdp +   + r +lg++ ta eAa a++ a++
  Pahal.D00792.1  2 PGYRGVRR-H-YGKWGAEIRDPLD---SERAWLGTYATAVEAAYAYDIAAR 47
                    79****95.4.7*********955...5*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-6246IPR001471AP2/ERF domain
CDDcd000181.58E-17258No hitNo description
SuperFamilySSF541712.35E-16360IPR016177DNA-binding domain
SMARTSM003809.8E-18365IPR001471AP2/ERF domain
PROSITE profilePS5103217.359359IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-22459IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
NPGYRGVRRH YGKWGAEIRD PLDSERAWLG TYATAVEAAY AYDIAARVVQ GNKARPNFSM  60
APPVPGDDED AADDIVHAYF AEVRHARLSR AERRAQAAAE AAAARAAAAS APAPGATEGE  120
HLPPRTGDAS NAGTDHE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811436.11e-91ethylene-responsive transcription factor ERF055-like
TrEMBLA0A2T8JC412e-90A0A2T8JC41_9POAL; Uncharacterized protein
STRINGPavir.Db00700.1.p2e-32(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2289355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.13e-09DORNROSCHEN-like