PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01084.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 204aa    MW: 21037.9 Da    PI: 4.7868
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01084.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.21.5e-103698466
             NAM  4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pk..kvkaeekewyfFskrdk 66
                     +rF+Ptdeel+++yL++k ++  ++l      +++  +ePwdL p+    +++    yfF++r+ 
  Pahal.D01084.1 36 VLRFRPTDEELLTHYLTPKEADAGFTL-A--VVCEVEWSEPWDLlPAggGSREGGGGGYFFCRRSG 98
                    58*********************9888.4..45577789*****54423333344467****9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-1229117IPR003441NAC domain
PROSITE profilePS5100510.14433188IPR003441NAC domain
PfamPF023658.1E-936108IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
PWSPPTTTAQ RDLAGGSDGG CVQAHERVRR ILLGPVLRFR PTDEELLTHY LTPKEADAGF  60
TLAVVCEVEW SEPWDLLPAG GGSREGGGGG YFFCRRSGGG RGTAVRAGRE KEVRDGDVCC  120
GDGGGEVEHV GHGGGDLVDS EEEGRAAEAR GWVGGEGERG EQRVDSGSAA AGTEGSEGKG  180
SVANSARMLW RRGEGSGGGG WRG*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.12e-09NAC domain containing protein 58