PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D01146.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 325aa MW: 36280.5 Da PI: 9.5218

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D01146.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.5	7.1e-09	68	131	1	47
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 r+ WT E+e+lv+a + ++ W Ia+t++ +Rt+kq+k++w+ y Pahal.D01146.1 68 RLDWTIAEEEKLVHAWVYHSNDsicdssctglsFWGQIAETFNstaepsRRRTAKQLKDHWNVY 131 789***********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.528	63	132	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.9E-5	64	133	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.74E-5	67	140	IPR009057	Homeodomain-like
Pfam	PF14303	2.2E-7	175	301	IPR029466	No apical meristem-associated, C-terminal domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MTGTRSRTEG PYPPPSYAPP PYAPPPYAPP LYGPYSPPPH AAPTVPSSVS VESQNEGAGG 60 TKPKRPKRLD WTIAEEEKLV HAWVYHSNDS ICDSSCTGLS FWGQIAETFN STAEPSRRRT 120 AKQLKDHWNV YNREVTQFNG YYIQEERVRQ SGADDAMVME GAMARYENDP KVTTAFKHHY 180 WWRAVRHEPK WAAKHGLGSG SDMSSKKTRL GVSGEYSSGG TEDTEEDNET RPIGRDRAKA 240 AKRKEKAKGK EKGKESSSSS AVASKAFAMK NMWGGLVKAK LFKQWNIMKS RSTEDMDEAK 300 KRTHFKAVKM VEKELGLDED SEEN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	299	303	KKRTH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008670977.1	1e-123	ribonuclease 3
TrEMBL	A0A2T7E0S8	1e-162	A0A2T7E0S8_9POAL; Uncharacterized protein
STRING	GRMZM2G369993_P01	1e-123	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3263	3	37

Link Out ? help Back to Top
Phytozome	Pahal.D01146.1